Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12460 459 / 3e-159 Protein of unknown function (DUF604) (.1) AT2G37730 318 / 5e-103 Protein of unknown function (DUF604) (.1) AT5G41460 293 / 3e-93 Protein of unknown function (DUF604) (.1) AT4G23490 286 / 1e-90 Protein of unknown function (DUF604) (.1) AT4G15240 281 / 3e-89 Protein of unknown function (DUF604) (.1) AT1G01570 271 / 1e-85 Protein of unknown function (DUF604) (.1) AT4G11350 270 / 7e-85 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT3G11420 270 / 2e-84 Protein of unknown function (DUF604) (.1) AT1G07850 266 / 1e-82 Protein of unknown function (DUF604) (.1) AT4G00300 268 / 5e-81 fringe-related protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G256200 [exp] 587 / 0 AT5G12460 444 / 2e-153 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 307 / 6e-99 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 305 / 3e-98 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 289 / 5e-92 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 288 / 6e-92 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 287 / 3e-91 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 282 / 5e-89 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 280 / 3e-88 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 279 / 4e-88 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009957 [exp] 593 / 0 AT5G12460 439 / 3e-151 Protein of unknown function (DUF604) (.1) Lus10027356 [exp] 530 / 0 AT5G12460 398 / 2e-135 Protein of unknown function (DUF604) (.1) Lus10027153 [exp] 286 / 6e-91 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10039693 [exp] 272 / 3e-86 AT4G15240 495 / 1e-173 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 274 / 6e-86 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10003179 [exp] 261 / 4e-85 AT5G12460 222 / 7e-71 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 269 / 4e-84 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 265 / 2e-83 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 267 / 3e-83 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10027152 [exp] 263 / 2e-82 AT4G15240 521 / 0.0 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02434 [poplar] [flax] Fringe Fringe-like
Representative CDS sequence Show only first row Show all	>Potri.009G051600.2 pacid=42771852 polypeptide=Potri.009G051600.2.p locus=Potri.009G051600 ID=Potri.009G051600.2.v4.1 annot-version=v4.1 ATGACACCATCAAACGCCACCAACTTGCACCCATCAATTCTCCAAGAGTTTCGAGTCTTGCCTCTTGGAATTCTATGCAAATCCATAGCTATTTCAGGCC TAGTGCTTCTTTTGTTCTATGCATTCTTGTCAAACAACCCTGAGAACCAATCTTCTGATTCATTCAACCTGCCCTTTCAACTCAAATGGCCTACAGCTTC ATCTTCAAGTAACGTTAACAACACCATGGACTCTCCAACTAATATTAGCCACATTGGATTTATAGTGATTGGTTCTTTGAATTCATGGAAGAATAGAAAA TCATACATTGAGTCATGGTGGCGGCCGAATGTTACTAGAGGATATGTCTTCTTAGACAAAGAACCCACCGAAGAATTTCTACCCTGGCCTTCAACTTCTC CTCCTTTTCAAGTCAACGAGGACATCACCAAATTAAGAGTGTACCCTAAAATCGCAAACCCTCTTCAAGTTCGAATGTTTCATTCGCTTTTAGATATGTA TAGAGTGGGAGATAAGGGTTTGAGATGGTTAATAATGTGTGATGATGACTCTATATTTTTCGTCGATAATTTGGTAGAAGTTCTACGGAAATACGATCAT AATAAGTATCAGTACATTGGAGGTATTTCAGAATGTGTCAAGTCAAATGCTGATTTCTCTTTTGATATGGGATTTGGTGGAGCTGGCTATGCTGTGAGTT ATCCATTTGCACAAGCAATATCAACCAAATTAGAAGATTGTATTGAAAGATACCCTCATTTGTGGGTTAGTGATCATATGGCGCAATCTTGTTTTGCTGA TCTTGGAATTGCTTTAACAATTGAGAAGGGGATTCACCAGATTGATCTACGTGGTGATATATCAGGCTTTCTATCATATCTCCCGCAATCTCCACTCCTC ACTCTCCACCATTTGGATATCGTAGATCCAATATTTCCCTCCATGGACAGGTACGAAGCTTTAAGGCACCTCATGAAAGCTGCAAAGGTTGATCAATCTC GCGTTGCACAGCAAACCATCTGCTACCAAAGAGAAAGCAACTGGTCTTTCTCTGTGTCGTGGGGCTATTCTACTCACATATATGAGAACATAATACCTCG AAGCATTCTACGCAAACCCATCGAAACGTTTAGGCCTTTCTCTAAGAACACTCGCCCTCCATTATACATGTTCAACACACGGTGGCAGATTAACAATCCA TGCGAAGCTCCTCATGTATTTTTCTTCGAGTCCATAGAGCATAATCCAGAGAACGACCAAGTTCTTACAACATATGTTCGAGCAGCACAACGGAACTTGC CACCTTGCTCAGCTTCTGGAAACCATTCCGCTGATTCCATCTCCAAAATTCGGGTCCTTTCTCAAGCAACAACACGCAAAACGGCCGGGGTAATAGAGTG CTGTGATGTTGATTACAAGGCGGAGACGAATATTACAGACATCAAAATAAGGTCGTGTTTGAAAGATGAAGTCATTGCCTGA
AA sequence Show only first row Show all	>Potri.009G051600.2 pacid=42771852 polypeptide=Potri.009G051600.2.p locus=Potri.009G051600 ID=Potri.009G051600.2.v4.1 annot-version=v4.1 MTPSNATNLHPSILQEFRVLPLGILCKSIAISGLVLLLFYAFLSNNPENQSSDSFNLPFQLKWPTASSSSNVNNTMDSPTNISHIGFIVIGSLNSWKNRK SYIESWWRPNVTRGYVFLDKEPTEEFLPWPSTSPPFQVNEDITKLRVYPKIANPLQVRMFHSLLDMYRVGDKGLRWLIMCDDDSIFFVDNLVEVLRKYDH NKYQYIGGISECVKSNADFSFDMGFGGAGYAVSYPFAQAISTKLEDCIERYPHLWVSDHMAQSCFADLGIALTIEKGIHQIDLRGDISGFLSYLPQSPLL TLHHLDIVDPIFPSMDRYEALRHLMKAAKVDQSRVAQQTICYQRESNWSFSVSWGYSTHIYENIIPRSILRKPIETFRPFSKNTRPPLYMFNTRWQINNP CEAPHVFFFESIEHNPENDQVLTTYVRAAQRNLPPCSASGNHSADSISKIRVLSQATTRKTAGVIECCDVDYKAETNITDIKIRSCLKDEVIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12460			Protein of unknown function (D...		Potri.009G051600 [exp]	0	1
AT1G03230			Eukaryotic aspartyl protease f...		Potri.019G064700 [exp]	1.41	0.9294
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Potri.006G046900 [exp]	2.00	0.8982
AT3G26760			NAD(P)-binding Rossmann-fold s...		Potri.002G236700 [exp]	2.44	0.8813
AT3G54960		ATPDI1, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.010G222100 [exp]	3.87	0.9103
AT1G03220			Eukaryotic aspartyl protease f...		Potri.008G203200 [exp]	7.00	0.8749
AT1G34110			Leucine-rich receptor-like pro...		Potri.005G198000 [exp]	7.07	0.8873
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.017G014100 [exp]	8.77	0.8593
AT1G51405			myosin-related (.1)		Potri.001G256700 [exp]	9.79	0.8518
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.008G017500 [exp]	10.48	0.8609
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Potri.015G126900 [exp]	11.40	0.8247	Pt-ATTPPA.2

Compare expression of checked genes

Potri.009G051600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.