Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12460 221 / 1e-69 Protein of unknown function (DUF604) (.1) AT2G37730 201 / 8e-61 Protein of unknown function (DUF604) (.1) AT4G11350 184 / 6e-55 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT5G41460 183 / 3e-54 Protein of unknown function (DUF604) (.1) AT4G23490 175 / 3e-51 Protein of unknown function (DUF604) (.1) AT4G15240 173 / 1e-50 Protein of unknown function (DUF604) (.1) AT1G01570 166 / 6e-48 Protein of unknown function (DUF604) (.1) AT4G00300 163 / 1e-45 fringe-related protein (.1.2) AT1G07850 160 / 1e-45 Protein of unknown function (DUF604) (.1) AT3G11420 155 / 7e-44 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G256200 [exp] 371 / 2e-127 AT5G12460 444 / 2e-153 Protein of unknown function (DUF604) (.1) Potri.009G051600 [exp] 262 / 8e-85 AT5G12460 459 / 4e-159 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 198 / 3e-60 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 193 / 4e-58 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 181 / 1e-53 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 180 / 3e-53 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 176 / 3e-52 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 176 / 6e-52 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 171 / 8e-50 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009957 [exp] 247 / 5e-79 AT5G12460 439 / 3e-151 Protein of unknown function (DUF604) (.1) Lus10027356 [exp] 242 / 3e-77 AT5G12460 398 / 2e-135 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 174 / 1e-50 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10027153 [exp] 173 / 1e-50 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 172 / 6e-50 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 168 / 4e-49 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 166 / 6e-48 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10002713 [exp] 160 / 7e-46 AT3G11420 460 / 5e-159 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 159 / 3e-45 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10024364 [exp] 146 / 5e-42 AT2G37730 405 / 1e-139 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02434 [poplar] [flax] Fringe Fringe-like
Representative CDS sequence Show only first row Show all	>Potri.009G051701.1 pacid=42771654 polypeptide=Potri.009G051701.1.p locus=Potri.009G051701 ID=Potri.009G051701.1.v4.1 annot-version=v4.1 ATGAGACGACGGCCACCTAAAAACGCAAGCACTTCTGTGAATATTACGACTACTCCAGCAAGTTTTAGCCGCATTGTGTTCGGCGTGGTGAGTTCTGTGA ACACATGGAAAAACAGAAAATCATATGCCGAGTCGTGGTGGCGACCGAATGTTACTCGAGGATATATTTTCCTTGGTAGAGCTCCCACACTAAGATACCA TCCTTGGCCTTCATCTTCTCCGCCTTTTCGAATCAATGCACCTATCAAATCTAGAATAAAGCACAAGTATATTTTTAGGCAGGGAGATAAAGATGTTAGA TGGTATGTAATGGCAGATGATGACAATGTCCTATTTATTGATAATTTAGTAGAAGTTCTAGCTAAGTATGATCATACTGAGTATTTCTATATTGGAACGA ATTCGGAATGTGTTAGCTCGAACATTATTTTCTCGTTCGAAATGGCATTTGGTGGAGCTGGGTATGCTTTGAGTTACCCTCTGGTAGAAGCTTTGTCAAC GAAGGTCGGTGGATGTGTTCAGCAATATCCAAATTATTCCAGTGATTTTATTTTGCAGGCATGTTTAGCTGATTTTGGAGTTTCTCTAACACATCGGAGA GGGTTTCTCCAGCAGATTGATCTACATGGTGACATCTCAGGCCTTCTATCTGCTCACCCTCAGTCTCCGATCCTCTTTCTTCACCTCCATGAACCGCTCT GCGTCCATAAACCATGTGCTACCGAAGGAAAAGCAACTGGTCTTTTTCTACTTCGTGGGGCTATGCCACTCATATATACGGAAATATATACCCTCAAAGC GTTTTGCTGA
AA sequence Show only first row Show all	>Potri.009G051701.1 pacid=42771654 polypeptide=Potri.009G051701.1.p locus=Potri.009G051701 ID=Potri.009G051701.1.v4.1 annot-version=v4.1 MRRRPPKNASTSVNITTTPASFSRIVFGVVSSVNTWKNRKSYAESWWRPNVTRGYIFLGRAPTLRYHPWPSSSPPFRINAPIKSRIKHKYIFRQGDKDVR WYVMADDDNVLFIDNLVEVLAKYDHTEYFYIGTNSECVSSNIIFSFEMAFGGAGYALSYPLVEALSTKVGGCVQQYPNYSSDFILQACLADFGVSLTHRR GFLQQIDLHGDISGLLSAHPQSPILFLHLHEPLCVHKPCATEGKATGLFLLRGAMPLIYTEIYTLKAFC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12460			Protein of unknown function (D...		Potri.009G051701 [exp]	0	1
					Potri.012G059801 [exp]	7.21	0.7935
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.001G064301 [exp]	74.83	0.7431
AT3G54040			PAR1 protein (.1)		Potri.006G094300 [exp]	105.21	0.7362

Compare expression of checked genes

Potri.009G051701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.