Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51440 701 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 521 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G06800 513 / 3e-179 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT1G30370 364 / 1e-120 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT1G05800 302 / 3e-97 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1) AT2G31690 300 / 2e-96 alpha/beta-Hydrolases superfamily protein (.1) AT4G18550 278 / 7e-89 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 277 / 3e-88 alpha/beta-Hydrolases superfamily protein (.1) AT2G42690 272 / 2e-86 alpha/beta-Hydrolases superfamily protein (.1) AT2G44810 258 / 7e-82 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G044700 [exp] 563 / 0 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G218500 [exp] 555 / 0 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G057900 [exp] 370 / 6e-123 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G263200 [exp] 357 / 1e-117 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G150700 [exp] 323 / 6e-106 AT2G31690 491 / 7e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G231600 [exp] 317 / 7e-103 AT1G05800 524 / 0.0 DONGLE, alpha/beta-Hydrolases superfamily protein (.1) Potri.011G064400 [exp] 299 / 6e-97 AT4G18550 501 / 3e-177 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054800 [exp] 297 / 3e-96 AT4G18550 516 / 0.0 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G101800 [exp] 290 / 2e-93 AT2G42690 531 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038524 [exp] 344 / 3e-114 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 339 / 3e-112 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 338 / 2e-110 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023280 [exp] 317 / 9e-102 AT1G30370 537 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10025519 [exp] 292 / 6e-93 AT2G31690 468 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1) Lus10017975 [exp] 276 / 9e-88 AT2G42690 524 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10026735 [exp] 276 / 6e-87 AT2G31690 472 / 1e-163 alpha/beta-Hydrolases superfamily protein (.1) Lus10013932 [exp] 266 / 8e-85 AT4G18550 427 / 5e-149 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10040158 [exp] 267 / 5e-83 AT4G16820 573 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10017668 [exp] 262 / 9e-83 AT4G18550 420 / 1e-145 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.009G051900.1 pacid=42772836 polypeptide=Potri.009G051900.1.p locus=Potri.009G051900 ID=Potri.009G051900.1.v4.1 annot-version=v4.1 ATGGCTTCACTGCTTTTGGCTTTCAACACCCAGAAAAGAACTCCACCACCTCTCTCTAAAGGTCTCTTGCCAAGATACAACCTCAACAAACCTAAATCCC TCTCTCTTCTGAACAAACCCTTTTCACCAAATTCTACAACTCTCAAGATCAAAGGCTCATCTGTATCAAGTGCTTTAACTCCACAACTAAACGAAACCCT AGTTAATCAAGAAGACGAGAGGCCTCTTAGCGAAATTTGGAAGGAAATTCAAGGCTGCAATGACTGGGAAGGACTACTGGACCCAATGAATTCCCATCTC CGCAAAGAAATCATTCGTTATGGAGAATTTGCACAAGCATCCTACGATTCTTTCGATTTTGATCCTCACTCTAAGTATTGTGGCTCATGCAAATACCGAG GAGCTCAGTTCTTTGAAAAGTTGGATATGCCAGGCCATGTTAATTACCAAATAAGCAGATACCTCTATGCAACCTCAAATATTAACCTGCCAAATTTCTT TCAAAAATCTAAGCTAAGCAGAGTTTGGAGCACATATGCGAACTGGATGGGGTACGTTGCTGTCACGACAAATGAAGAAGAGATCAAACGGCTAGGGAGG CGCGACATAGTCGTTGCATGGAGAGGCACAGTCACATATCTAGAATGGATTTATGATCTCAAAGATATCCTTTGCGTGGCCAATTTCACAAATGATCCAT CCATCAAGATTGAGTTGGGTTTTTATGATTTGTATACCAAGAAAGAGAATTCTTGCAAGTACTGCACATTCTCAGCTCGCGAACAAGTTTTGGCTGAGAT TAAGCGGCTTCTTGATTACTATAGAGGTGAAGAAATTAGTATTACCATCACGGGGCACAGCCTCGGGGCAGCTTTGGCTACTTTAAGTGCTTATGATATT GCAGAGATGAGACTTAATTACATGGATGATGGAGAGTATAGGACTAGAATTCCTATCACGGTCTACTCTTTCTCGGGTCCTCGTGTGGGAAATCTTAAAT TCAAGGAACGGTGCGATGAGCTCGGGGTTAAGGTGCTGAGGGTGATCAACGTGCATGATAAGGTACCAACCGTGCCAGGGATCATTGCTAATGAGAAATT ACAATTCCAAAAATACATAGAAGACAATATGTCATTTCCTTGGAGCTACGCGCATGTTGGGGTGGAACTTGCATTGGATCACACCCATAGCCCATTTCTA AAGCCTACTAAAGATCTCGGTTGCGCACATAATCTTGAAGCTCATTTACACTTGGTGGATGGCTACCATGGCAAAGGCCAGCGATTTTGCTTGGCGACAA AAAGGGATATCGCCCTTGTTAACAAAAGTTGCGACTTCTTGAGGAGGGAGTACGGGGTGCCACCGTATTGGCGGCAAGATGAGAACAAAGGGATGGTGAG AAATGCTGACGGCCGGTGGGTTTTGCCAGAGAGGCCCAGAGCGGACGCTCATCCAGCAGATACGGCACATCACGTTGAACAAGTGCTCAAGAATATCGCT GGTTCTTCTCAGATGGAGGCTCTATAA
AA sequence Show only first row Show all	>Potri.009G051900.1 pacid=42772836 polypeptide=Potri.009G051900.1.p locus=Potri.009G051900 ID=Potri.009G051900.1.v4.1 annot-version=v4.1 MASLLLAFNTQKRTPPPLSKGLLPRYNLNKPKSLSLLNKPFSPNSTTLKIKGSSVSSALTPQLNETLVNQEDERPLSEIWKEIQGCNDWEGLLDPMNSHL RKEIIRYGEFAQASYDSFDFDPHSKYCGSCKYRGAQFFEKLDMPGHVNYQISRYLYATSNINLPNFFQKSKLSRVWSTYANWMGYVAVTTNEEEIKRLGR RDIVVAWRGTVTYLEWIYDLKDILCVANFTNDPSIKIELGFYDLYTKKENSCKYCTFSAREQVLAEIKRLLDYYRGEEISITITGHSLGAALATLSAYDI AEMRLNYMDDGEYRTRIPITVYSFSGPRVGNLKFKERCDELGVKVLRVINVHDKVPTVPGIIANEKLQFQKYIEDNMSFPWSYAHVGVELALDHTHSPFL KPTKDLGCAHNLEAHLHLVDGYHGKGQRFCLATKRDIALVNKSCDFLRREYGVPPYWRQDENKGMVRNADGRWVLPERPRADAHPADTAHHVEQVLKNIA GSSQMEAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51440			alpha/beta-Hydrolases superfam...		Potri.009G051900 [exp]	0	1
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Potri.015G020500 [exp]	1.73	0.9162
AT5G38260			Protein kinase superfamily pro...		Potri.015G045000 [exp]	8.94	0.8847
AT1G11050			Protein kinase superfamily pro...		Potri.017G132800 [exp]	10.48	0.9084
AT2G14750		APK1, ATAKN1, A...	ADENOSINE-5'-PHOSPHOSULFATE \(...		Potri.009G088100 [exp]	13.30	0.8334
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.006G007600 [exp]	16.09	0.8653
AT1G11050			Protein kinase superfamily pro...		Potri.017G133000 [exp]	17.02	0.8957
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Potri.004G164000 [exp]	19.69	0.9013
AT1G69310	WRKY	ATWRKY57, WRKY5...	WRKY DNA-binding protein 57 (....		Potri.008G094000 [exp]	20.49	0.8853
AT1G20070			unknown protein		Potri.002G019700 [exp]	21.72	0.8556
AT3G58030			RING/U-box superfamily protein...		Potri.006G193600 [exp]	21.81	0.8842

Compare expression of checked genes

Potri.009G051900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.