Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CCRL4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51410 563 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 546 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 375 / 3e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 365 / 7e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09500 351 / 3e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G66800 348 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G15950 283 / 6e-94 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT4G35420 280 / 4e-93 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT5G58490 280 / 5e-93 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G256400 [exp] 635 / 0 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 489 / 2e-175 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057500 [exp] 452 / 3e-161 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057800 [exp] 445 / 5e-158 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G045000 [exp] 298 / 6e-100 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.003G181400 [exp] 293 / 4e-98 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045500 [exp] 293 / 5e-98 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 293 / 5e-98 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 292 / 8e-98 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009955 [exp] 579 / 0 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 479 / 2e-171 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 427 / 3e-151 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 421 / 1e-148 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 419 / 4e-148 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 414 / 5e-146 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 390 / 1e-136 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024130 [exp] 392 / 9e-130 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2) Lus10029484 [exp] 363 / 1e-126 AT5G19440 355 / 1e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019732 [exp] 351 / 5e-121 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G052000.1 pacid=42772779 polypeptide=Potri.009G052000.1.p locus=Potri.009G052000 ID=Potri.009G052000.1.v4.1 annot-version=v4.1 ATGAGCAGTGGAGCCGGAAAGATCGTGTGCGTGACTGGAGCTTCGGGTTACATAGCATCATGGCTTGTGAAGCTCCTCCTCTCGCGTGGTTACACTGTCA AGGCCTCTGTTCGTGACCCAAATGATCCCAAAAAGACAGAACACTTACGTGCACTTAATGGAGCTCAGGAGAGACTTCAGCTGTTCAAAGCAAATTTACT GGAAGAAGGTTCCTTTGATTCTATTGTAGAAGGGTGTGAAGGTGTTTTCCACACTGCATCTCCGTTTTATCATGATGTGAAGGACCCACAGGTAGAATTG CTGGATCCTGCAGTGAAAGGAACACTCAATGTTCTTGGCTCATGTGCAAAACACCCGTCAATCAGACGAGTTGTTTTAACATCTTCTGTTGCTGCAGTTG CTTACAATGGGAAACCTCGAACCCCAGATGTAGTAGTGGATGAAACTTGGTTTTCTGATCCAAACTTGTGCAGAGAATCTAAGGTTTGGTATGTGCTCTC AAAGACTTTGGCCGAGGATGCTGCATGGAAATTTGCAAAAGAAAAGGATATGGACATGGTTGCAATAAATCCAGCAATGGTAATTGGTCCTCTCTTGCAG CCAACACTAAATACAAGTGCTGCGGCAATTTTAAGCCTAATTAAAGGAGCACAAACTTTCCCCAATGCATCTTTTGGATGGATAAATGTTAAAGATGTTG CCAATGCACACATTCAAGCATTTGAGCTGTCATCAGCTAGTGGGAGATATTGTTTGGTTGAGAGAGTGGCACACTACTCAGAAGTAGTGAAGATTCTGCA TGAGCTTTACCCCGATCTCCAACTCCCAGAAAAGTGTGCCGATGATAAGCCATATGTACCAATCTATCAAGTTTCCAAGGAAAAAGCAAAAAGCTTGGGT GTTGAATTCATTCCTTTGGAAGCAAGCGTTAAGGAAACAGTTGAAAGCTTGAAGGAGAAAGGATTTGTCAGTTTTTAA
AA sequence Show only first row Show all	>Potri.009G052000.1 pacid=42772779 polypeptide=Potri.009G052000.1.p locus=Potri.009G052000 ID=Potri.009G052000.1.v4.1 annot-version=v4.1 MSSGAGKIVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTEHLRALNGAQERLQLFKANLLEEGSFDSIVEGCEGVFHTASPFYHDVKDPQVEL LDPAVKGTLNVLGSCAKHPSIRRVVLTSSVAAVAYNGKPRTPDVVVDETWFSDPNLCRESKVWYVLSKTLAEDAAWKFAKEKDMDMVAINPAMVIGPLLQ PTLNTSAAAILSLIKGAQTFPNASFGWINVKDVANAHIQAFELSSASGRYCLVERVAHYSEVVKILHELYPDLQLPEKCADDKPYVPIYQVSKEKAKSLG VEFIPLEASVKETVESLKEKGFVSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51410			NAD(P)-binding Rossmann-fold s...		Potri.009G052000 [exp]	0	1	CCRL4
AT2G31490			unknown protein		Potri.006G077400 [exp]	1.73	0.8082
AT4G13360			ATP-dependent caseinolytic (Cl...		Potri.006G156350 [exp]	3.00	0.7977
AT5G19760			Mitochondrial substrate carrie...		Potri.003G220400 [exp]	3.16	0.8042
AT3G06170			Serinc-domain containing serin...		Potri.008G201900 [exp]	3.74	0.7678
AT2G44060			Late embryogenesis abundant pr...		Potri.007G146300 [exp]	4.24	0.7211
AT4G13360			ATP-dependent caseinolytic (Cl...		Potri.006G155700 [exp]	6.48	0.7691
AT5G40810			Cytochrome C1 family (.1.2)		Potri.004G203800 [exp]	11.31	0.7547
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Potri.015G098600 [exp]	16.61	0.7946
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.001G450900 [exp]	20.49	0.6905
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Potri.009G015400 [exp]	20.68	0.6483	APX.3

Compare expression of checked genes

Potri.009G052000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.