Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27410 188 / 1e-55 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G52890 187 / 6e-55 NAC ANAC019 NAC domain containing protein 19 (.1) AT3G15500 186 / 2e-54 NAC ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1) AT1G01720 184 / 5e-54 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G77450 181 / 1e-53 NAC ANAC032 NAC domain containing protein 32 (.1) AT1G69490 181 / 4e-53 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT1G61110 179 / 4e-52 NAC ANAC025 NAC domain containing protein 25 (.1) AT3G04070 178 / 4e-51 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT3G15510 176 / 2e-50 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT5G08790 170 / 8e-49 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G256600 [exp] 425 / 9e-145 AT3G04070 190 / 7e-56 NAC domain containing protein 47 (.1.2) Potri.009G052300 [exp] 277 / 1e-88 AT1G01720 179 / 2e-53 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.018G095000 [exp] 203 / 9e-60 AT1G01720 187 / 3e-56 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.003G103500 [exp] 193 / 2e-57 AT1G69490 117 / 5e-31 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.008G089000 [exp] 191 / 6e-57 AT1G69490 331 / 6e-115 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.001G404100 [exp] 190 / 7e-56 AT4G27410 370 / 8e-129 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.011G123300 [exp] 189 / 2e-55 AT4G27410 354 / 2e-122 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.005G180200 [exp] 183 / 5e-54 AT1G01720 392 / 9e-139 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.011G046700 [exp] 186 / 6e-54 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027357 [exp] 213 / 7e-63 AT3G04070 172 / 3e-50 NAC domain containing protein 47 (.1.2) Lus10003847 [exp] 204 / 2e-61 AT1G61110 196 / 3e-60 NAC domain containing protein 25 (.1) Lus10037156 [exp] 191 / 1e-56 AT1G69490 318 / 2e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10036773 [exp] 191 / 1e-56 AT1G69490 318 / 1e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10002083 [exp] 199 / 2e-56 AT5G08790 225 / 7e-69 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10006547 [exp] 192 / 3e-56 AT3G04070 337 / 4e-114 NAC domain containing protein 47 (.1.2) Lus10003269 [exp] 192 / 3e-56 AT3G04070 324 / 3e-109 NAC domain containing protein 47 (.1.2) Lus10018469 [exp] 187 / 1e-54 AT1G61110 301 / 5e-101 NAC domain containing protein 25 (.1) Lus10011215 [exp] 186 / 3e-54 AT1G61110 305 / 1e-102 NAC domain containing protein 25 (.1) Lus10042531 [exp] 186 / 6e-54 AT3G04070 303 / 4e-101 NAC domain containing protein 47 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.009G052200.1 pacid=42771562 polypeptide=Potri.009G052200.1.p locus=Potri.009G052200 ID=Potri.009G052200.1.v4.1 annot-version=v4.1 ATGTCGTCTTTAGAAGAAAATTCTTCAGAGAGTCCTACAATGGAGTTTACCGAGGAATCAATGCCGAACGTAGAGCATTCTCTTACCACTCCAATAACAC CAAACATCACTTCAAATTCCTCTGTATCACCGCCCCAAATCCTGATCAATTCAACCTCATTGCCTCCTCCACCAGCACCAGTACCAGTACCGCAGCCACC TTCTGCCACTGCTTCACCATCACTAGTACTACAGTCACCTTCTACGTTTACATTAGCAGCAGCAGCACCACCACGACCCAGATTCGCTAATGACCGTGAT GACGATCATTATTTCAATAGTTTCCCACCTGGATATAGGTTTTGCCCGCATGATCATGAGCTGGTGATACATTACTTGACCAATAAGGTTAAAGGTTTGC CATTGCCTCGGAACAAAATTGTAGATGTTATTCTCTACCAATACGATCCCGAGTATCTTGCAGATAGATACCAGAAATTTGGGGAAAAAGAATGGTACTT CTTCACCCCTCGGGACAGAAAGTACAAGAATGGAAGTAGACCAAATCGAGCTGCCAATGGTGGATACTGGAAAGCCACTGGAGCTGATAAGAACATCACA CATGATGAAGCTGTTGTTGGATATAGAAAGGCACTCGTTTATTATACCGGGAAGGCTCCAAAGGGTGACAAAACCAACTGGATAATGCACGAGTTTAGAG TGAATGAACCAATTCCTCAAGTCAGAAATCATAGAGATGACATGAGGCTGGATGAATGGGTTCTGTGCAGGATTTACAAGAAACAGGAGAAGCGTAATAA TGTCAGAAATGAACAAAGGAATGAAGAACGTACTAATGTCATAAATGAACAAAGGAATGAGGAACATTCTTCAGGGTCAATGGATGATATTGAGGAAGAT TATCTCCATGATCATAATTCAAATGATCTGGCTGCTATGGGCGCTGACTATGCTGGGGAGATTTACGACATGGGTACTGGTTCTTTAGAGAATGCATTCC CAGTATTTAATGAGTTAAGTCAACAACCGACTGCTCTGAGAGGATACTCAGATGGTATTAACTTTTTTCCAGCTCCTGCTCACCATAGCAGGACGTTGCA AGATACACAGGTCCCCAATTTGGCTGAGACATTTGGAAATCCTGCCCCAGTTTTCCCCGTTGACAACTGGCCATACAGGCAAAGGGGATACCAAGACGAG TTTCTGAATCATACGAACTGGTCTCAGGTTAACATTCCCGGCCAATCTCTTGACCGCTATTCTGTCAAGCCAACTTATCTTCCAGGAAATCCTGCTCCTC TTGTCAACCTTCGTCCCACAAATACTGCTCGTCCTCCTCACGGCCTTCCTTACATGAATACCGCTCCGCCAGCTGGCAGCCTTCCTCCTAGAAATACTGC TCGTCCTACTGGCTGCCTTCCTCCCACAAATACTCCTTTTCTTACCAGGCGCCATCCTCCCACAAATCCTGCAAATAGTCAGCCAACGAAACTGACGGAT GTTGATGCCAAACTTCCCAGACGGCCTCCTCAGCACTTATGA
AA sequence Show only first row Show all	>Potri.009G052200.1 pacid=42771562 polypeptide=Potri.009G052200.1.p locus=Potri.009G052200 ID=Potri.009G052200.1.v4.1 annot-version=v4.1 MSSLEENSSESPTMEFTEESMPNVEHSLTTPITPNITSNSSVSPPQILINSTSLPPPPAPVPVPQPPSATASPSLVLQSPSTFTLAAAAPPRPRFANDRD DDHYFNSFPPGYRFCPHDHELVIHYLTNKVKGLPLPRNKIVDVILYQYDPEYLADRYQKFGEKEWYFFTPRDRKYKNGSRPNRAANGGYWKATGADKNIT HDEAVVGYRKALVYYTGKAPKGDKTNWIMHEFRVNEPIPQVRNHRDDMRLDEWVLCRIYKKQEKRNNVRNEQRNEERTNVINEQRNEEHSSGSMDDIEED YLHDHNSNDLAAMGADYAGEIYDMGTGSLENAFPVFNELSQQPTALRGYSDGINFFPAPAHHSRTLQDTQVPNLAETFGNPAPVFPVDNWPYRQRGYQDE FLNHTNWSQVNIPGQSLDRYSVKPTYLPGNPAPLVNLRPTNTARPPHGLPYMNTAPPAGSLPPRNTARPTGCLPPTNTPFLTRRHPPTNPANSQPTKLTD VDAKLPRRPPQHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Potri.009G052200 [exp]	0	1
AT1G18280			Bifunctional inhibitor/lipid-t...		Potri.015G036201 [exp]	2.23	0.9569
AT2G33670		ATMLO5, MLO5	MILDEW RESISTANCE LOCUS O 5, S...		Potri.005G254800 [exp]	19.89	0.9448
AT5G20310			Adenine nucleotide alpha hydro...		Potri.018G147200 [exp]	20.19	0.9434
AT1G09380			nodulin MtN21 /EamA-like trans...		Potri.005G006600 [exp]	23.34	0.9444
					Potri.011G044012 [exp]	25.65	0.9356
					Potri.010G096850 [exp]	27.71	0.9254
					Potri.008G040200 [exp]	28.37	0.8770
					Potri.010G095050 [exp]	32.71	0.8813
AT3G54070			Ankyrin repeat family protein ...		Potri.006G281500 [exp]	36.33	0.9225
AT4G10790			UBX domain-containing protein ...		Potri.003G145200 [exp]	37.01	0.7519

Compare expression of checked genes

Potri.009G052200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.