Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01720 179 / 2e-53 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G77450 175 / 1e-52 NAC ANAC032 NAC domain containing protein 32 (.1) AT5G08790 175 / 4e-52 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G61110 176 / 6e-52 NAC ANAC025 NAC domain containing protein 25 (.1) AT3G04070 176 / 1e-51 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT5G63790 172 / 1e-50 NAC ANAC102 NAC domain containing protein 102 (.1) AT1G69490 170 / 2e-50 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT4G27410 168 / 3e-49 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT3G15510 169 / 8e-49 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT1G52890 166 / 2e-48 NAC ANAC019 NAC domain containing protein 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G052200 [exp] 290 / 7e-94 AT4G27410 188 / 1e-55 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.001G256600 [exp] 265 / 2e-84 AT3G04070 190 / 7e-56 NAC domain containing protein 47 (.1.2) Potri.018G095000 [exp] 197 / 9e-59 AT1G01720 187 / 3e-56 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.005G180200 [exp] 180 / 3e-54 AT1G01720 392 / 9e-139 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.004G038000 [exp] 182 / 4e-54 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.002G081000 [exp] 180 / 6e-54 AT1G01720 416 / 5e-148 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.011G123500 [exp] 181 / 1e-53 AT3G15510 323 / 4e-109 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.011G046700 [exp] 181 / 2e-53 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.001G404400 [exp] 180 / 5e-53 AT3G15510 345 / 1e-117 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027357 [exp] 204 / 9e-61 AT3G04070 172 / 3e-50 NAC domain containing protein 47 (.1.2) Lus10003847 [exp] 197 / 7e-60 AT1G61110 196 / 3e-60 NAC domain containing protein 25 (.1) Lus10002083 [exp] 190 / 1e-54 AT5G08790 225 / 7e-69 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10030446 [exp] 179 / 8e-54 AT1G69490 302 / 2e-103 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10011215 [exp] 181 / 1e-53 AT1G61110 305 / 1e-102 NAC domain containing protein 25 (.1) Lus10032657 [exp] 182 / 2e-53 AT3G15510 353 / 1e-120 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10018469 [exp] 181 / 2e-53 AT1G61110 301 / 5e-101 NAC domain containing protein 25 (.1) Lus10043095 [exp] 181 / 3e-53 AT3G15510 351 / 1e-119 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10006547 [exp] 181 / 5e-53 AT3G04070 337 / 4e-114 NAC domain containing protein 47 (.1.2) Lus10003269 [exp] 180 / 7e-53 AT3G04070 324 / 3e-109 NAC domain containing protein 47 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.009G052300.1 pacid=42770887 polypeptide=Potri.009G052300.1.p locus=Potri.009G052300 ID=Potri.009G052300.1.v4.1 annot-version=v4.1 ATGTCCTGCCAAGGAGACATTGCTTTCGAGTGTCCTACTATGGAGTTTACTGAGGAATCAAAGCCGAACGTACAGGTTTCTGCTACCACTTCAGGGGTTT CAAACAGTCTTTCAGAGCCTTTCAAGCCATCACCAAGCTCACCATCTTCTGTGAATTCTTCACAACCATCACCAAGAATTTCTGGTCATGATCATGTGAT AAATCCAGATAATAATGATGATGATGGTGACAGCTATTTCAATAATTTTCCAGCCGGTTATAGGTTTTGCCCTCATAACCATGAGCTGGTTTTGCATTAC TTGAAGAATAAGGTCAGTGGGCTGCCATTGCCTAGGAACAGGATTGCTGATGTTTCACTTTATCAACATAATCCCGAGGAGCTTGCAGAGCAATTTAAGC ACTATGGAGAAAGGGAATGGTATTTTTTTACACCAAGGGACAAGAAGTACAGAAATGGAACTAGGCCGAATCGAGCAGCAGGCGGCGGATACTGGAAAGC CACTGGAGCTGATAAGAAAATCGTACACGATAAGGCTATTGTTGGATATAGGAAGTCACTGGTTTATTATAATGGAAAGGCCCCTAAGGGTGATAAAACC AACTGGATGATGCATGAATTTAGAATGGAAGCTGCAGCTCCTCCAATCAGAAATAACATAAATGACATGAGGCTTGATGAATGGGTTTTGTGTAGGATTT ACAAGAAAATTCAGAAGCCTGTCAAATATCGAGAGCAATTTTCTTCACAGAAACACCAGCTCCTTATTGGTCCAAATGATCTGGCTGCTATGGATGGTGA CCGCAACAGTGGTAATGATTCATGGGAAAATCCATGGCAGCAACAGGCTACTCCTCCTTTAGCTGGATTTGATGACTTATTTTTCTTCTGCAACAGTTAT TCTGCAGCCCAGGTCCCATTTTTACCAGAGACTTATGAAGATCCTGTCCCCATGCTTCTGAGTTCCGACTTTTCAAAAGGGTTACCAGAAGAAATATGGA ATCCTCCCATCCTTCAATTTGATCTAGCTGAAACATTTAATTTGTATGGTAGCACGGAAGATAATCCTGAGACCATCACTAATCTCCCAGCTGAGAATCT CCGAATCAATCCTTCTCCTGCAAGCACCGGTCGATCTGTCAACATCAGAAACGACTGTTGA
AA sequence Show only first row Show all	>Potri.009G052300.1 pacid=42770887 polypeptide=Potri.009G052300.1.p locus=Potri.009G052300 ID=Potri.009G052300.1.v4.1 annot-version=v4.1 MSCQGDIAFECPTMEFTEESKPNVQVSATTSGVSNSLSEPFKPSPSSPSSVNSSQPSPRISGHDHVINPDNNDDDGDSYFNNFPAGYRFCPHNHELVLHY LKNKVSGLPLPRNRIADVSLYQHNPEELAEQFKHYGEREWYFFTPRDKKYRNGTRPNRAAGGGYWKATGADKKIVHDKAIVGYRKSLVYYNGKAPKGDKT NWMMHEFRMEAAAPPIRNNINDMRLDEWVLCRIYKKIQKPVKYREQFSSQKHQLLIGPNDLAAMDGDRNSGNDSWENPWQQQATPPLAGFDDLFFFCNSY SAAQVPFLPETYEDPVPMLLSSDFSKGLPEEIWNPPILQFDLAETFNLYGSTEDNPETITNLPAENLRINPSPASTGRSVNIRNDC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Potri.009G052300 [exp]	0	1
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.003G052600 [exp]	6.16	0.6815
AT4G14750		IQD19	IQ-domain 19 (.1)		Potri.008G156700 [exp]	11.61	0.6474
					Potri.013G001750 [exp]	16.97	0.6157
AT1G55290			2-oxoglutarate (2OG) and Fe(II...		Potri.001G007100 [exp]	18.22	0.6763
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023550 [exp]	18.97	0.5624
AT1G72490			unknown protein		Potri.001G166700 [exp]	19.39	0.6221
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.017G048100 [exp]	26.94	0.6253
					Potri.010G224650 [exp]	29.84	0.5587
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Potri.008G128301 [exp]	48.74	0.5115
AT5G44680			DNA glycosylase superfamily pr...		Potri.008G081000 [exp]	49.98	0.5723

Compare expression of checked genes

Potri.009G052300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.