Plant FIBer expression Database

Potri.009G052400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G51405 294 / 8e-94 myosin-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G256700
[exp]
740 / 0 AT1G51405 327 / 8e-107 myosin-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009954
[exp]
326 / 3e-106 AT1G51405 289 / 2e-92 myosin-related (.1)
Lus10003186
[exp]
293 / 2e-94 AT1G51405 274 / 1e-87 myosin-related (.1)
PFAM info
Representative CDS sequence
>Potri.009G052400.1 pacid=42770756 polypeptide=Potri.009G052400.1.p locus=Potri.009G052400 ID=Potri.009G052400.1.v4.1 annot-version=v4.1
ATGGATAAAGTATCGACAATAACAACATTGACAACAAGGAGACCAAAATGGCAATACCCACCAGCCCAACCAACTCCAAGAATCCTCCATTTACCTCGAA
GGCCTCGCAGGAAACCACAAGTGCCAAAGGCCAATGCCACAAAGCCAAGTTCACAAAGAGACGAGAAAGGAAAGTTAGAGGCTTTGTTTGATCAAGAAAG
AGGGTTTGCAAGAGGGGTTGTGCCAATTATGATGGCTAGCGGTAGCAGGGGTTATCAGTGCTTTGAGGAGGAGAGGAGGGAGAGAGTGGAGGAGAGGGAG
AGTGTGGTGATGGAGGAGGAGAAGTGGAGGTTTCAAGCTGAGATGTTGAGGGCAGAGTGTAATTTGTTGCGGATGGAGAGAGAGATTGCTGTCAAGAAGA
TGGAGAGAAGAAGAGTTCAAATGGAGAGGATTCTGAGATCTGCTGTTGAAACTCTGCTTTCTGGGAGAAAAGGGATTTGTGATGGCAAGGATGCGAGCAT
GGTATTGGATGAAGAGATTCAAGAATTGGTAGAGAAGCTAGAGAAGTTGCAAAGAAGATCAGGGGTTAAGGATTTAGAAGGTCGAAAGTGTAGTAATTTA
GATAGACAAGTATCTCTTCTTCAAAGAGGGCTAAAGAACTTTGGAGGAGAATCGGACGAGAAATGCGTTAAGGAGATCCAAGAGGTGGCGGAAGCAAGCA
TGTCCATAAAAACAAACTGCAGTGTCCATGAGACTTTTGCTTCAAATCGCAGTTGCAATCAGATGGAGATACTGAGAAGGAAAATGGAGGGATTGTCGAA
TAGAAGCTTGTTGGAGAGAATGGAAGATGAGTATGGTTCAATGCACTCTACAGCCAGCAGTTCTGCTGCCAATTATGCCTCCTCTTCCAAGAGAATAATA
GAATTTCCTGATAAGCCTTCATCTTCAACAAGACAACCATGCAAGGAGGAGAAAACATGCTCTGGGTGCTGCAAGATCATAGTGCGGAGCGTCATAGAGC
AAGTTCAGGCTGAGACAGAGCAATGGTCCCAAATGCAAGAGATGCTTGGGCAAGTCAGGAATGAGATGGAAGAGTTGCAGGCTTCTAGAGATTTTTGGGA
AGATCGAGCACTTGATTCTGATTGTCAAATTCAATCCCTGAATTCTGCTGTGCAAGAATGGAGACAGAAAGCCCTCTCTTCTGAAGCCAAGGCAAATGAG
CTACAAAATCAGGTAGCTGTGCTTCAAGAGGAGCTCGAGAGGTTGAGGAAGGAAAGAGTTAAAGAGACATCAAGGTCTAAAAACTTACCATCAATTTCTT
TGGAGGCTCCAAATGAGACTGAGAAGCGAGTATTAGTTTGTCGTTTGAAGGAAAACCGTAATACTAATGATGATTGTCGCCAGAAGAAGGCCTTTAGTGA
TGGCAGCAGAAAGCCACACGCCTGCGCCGGTGGACTTGATGCTCCAAAACGGTCACTTTTTAGAGATATTGGAAATTCATCTCCCTTGGCGAGACAAAAT
AGTAGAGCAGTTTTCCCTTTGCACTACCCTGTGCAGGAAAACTTCAAATTCTGA
AA sequence
>Potri.009G052400.1 pacid=42770756 polypeptide=Potri.009G052400.1.p locus=Potri.009G052400 ID=Potri.009G052400.1.v4.1 annot-version=v4.1
MDKVSTITTLTTRRPKWQYPPAQPTPRILHLPRRPRRKPQVPKANATKPSSQRDEKGKLEALFDQERGFARGVVPIMMASGSRGYQCFEEERRERVEERE
SVVMEEEKWRFQAEMLRAECNLLRMEREIAVKKMERRRVQMERILRSAVETLLSGRKGICDGKDASMVLDEEIQELVEKLEKLQRRSGVKDLEGRKCSNL
DRQVSLLQRGLKNFGGESDEKCVKEIQEVAEASMSIKTNCSVHETFASNRSCNQMEILRRKMEGLSNRSLLERMEDEYGSMHSTASSSAANYASSSKRII
EFPDKPSSSTRQPCKEEKTCSGCCKIIVRSVIEQVQAETEQWSQMQEMLGQVRNEMEELQASRDFWEDRALDSDCQIQSLNSAVQEWRQKALSSEAKANE
LQNQVAVLQEELERLRKERVKETSRSKNLPSISLEAPNETEKRVLVCRLKENRNTNDDCRQKKAFSDGSRKPHACAGGLDAPKRSLFRDIGNSSPLARQN
SRAVFPLHYPVQENFKF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G51405 myosin-related (.1) Potri.009G052400
[exp]
0 1
AT5G14210 Leucine-rich repeat protein ki... Potri.015G093100
[exp]
4.35 0.8635
AT5G60440 MADS AGL62 AGAMOUS-like 62 (.1) Potri.012G110100
[exp]
6.32 0.8282
AT4G18830 OFP ATOFP5, OFP5 ovate family protein 5 (.1) Potri.015G004300
[exp]
6.63 0.9040
Potri.008G148266
[exp]
7.74 0.8436
AT3G57030 Calcium-dependent phosphotries... Potri.008G109966
[exp]
10.24 0.8972
AT4G01470 ATTIP1.3, GAMMA... tonoplast intrinsic protein 1;... Potri.004G216500
[exp]
10.81 0.9000
AT1G01140 PKS6, CIPK9, Sn... SNF1-RELATED PROTEIN KINASE 3.... Potri.002G177900
[exp]
12.96 0.8850
AT1G20080 SYT2, NTMCTYPE1... synaptotagmin 2, Calcium-depen... Potri.002G019800
[exp]
14.89 0.8893
Potri.016G139350
[exp]
19.74 0.8826
AT1G65620 AS2 AS2 ASYMMETRIC LEAVES 2, Lateral o... Potri.010G177100
[exp]
21.33 0.8762 AS2.1

Potri.009G052400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.