Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51400 97 / 2e-27 Photosystem II 5 kD protein (.1) AT3G21055 80 / 1e-20 PSBTN photosystem II subunit T (.1) AT1G51402 36 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G256900 [exp] 159 / 2e-52 AT1G51400 91 / 3e-25 Photosystem II 5 kD protein (.1) Potri.001G265000 [exp] 51 / 1e-09 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009950 [exp] 99 / 2e-28 AT1G51400 94 / 3e-26 Photosystem II 5 kD protein (.1) Lus10030132 [exp] 99 / 4e-28 AT1G51400 92 / 2e-25 Photosystem II 5 kD protein (.1) Lus10027359 [exp] 73 / 5e-18 AT3G21055 81 / 3e-21 photosystem II subunit T (.1) Lus10014908 [exp] 68 / 4e-16 AT1G51400 81 / 2e-21 Photosystem II 5 kD protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G052500.1 pacid=42772840 polypeptide=Potri.009G052500.1.p locus=Potri.009G052500 ID=Potri.009G052500.1.v4.1 annot-version=v4.1 ATGGCATCCATAACCATGACAGCCTCATTCCTAACTGGTTCCGCCATGGCCAAACAGCCTTCGACAACCCCACGTAGAGGGCTCATTGTGGCCAAGGCCT CAAGAGCCACAGAGGGAGTCAACGTGGAGATGAAGAACAGAGAAGAGAGCAGCGGTGGGAGGAGGGATTTGATGTTTGCAGCTGCAGCTGCTGCTGCCTA CTCCATTGCCAGAGTCGCCATCGCTGATGAAGAACCTCGGCGAGGGACCCCAGAAGCTAAGAAGAAGTATGCTCCTATTTGTGTCACAATGCCAACTGCT CGTATCTGCCGCAACTGA
AA sequence Show only first row Show all	>Potri.009G052500.1 pacid=42772840 polypeptide=Potri.009G052500.1.p locus=Potri.009G052500 ID=Potri.009G052500.1.v4.1 annot-version=v4.1 MASITMTASFLTGSAMAKQPSTTPRRGLIVAKASRATEGVNVEMKNREESSGGRRDLMFAAAAAAAYSIARVAIADEEPRRGTPEAKKKYAPICVTMPTA RICRN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51400			Photosystem II 5 kD protein (....		Potri.009G052500 [exp]	0	1
					Potri.006G031300 [exp]	3.46	0.9300
AT3G57770			Protein kinase superfamily pro...		Potri.005G106600 [exp]	5.47	0.9235
AT1G68840	AP2_ERF	EDF2, RAV2, RAP...	TEMPRANILLO 2, RELATED TO AP2 ...		Potri.014G068000 [exp]	6.48	0.8635
AT1G74000		SS3	strictosidine synthase 3 (.1)		Potri.015G037700 [exp]	7.00	0.8118
AT1G01710			Acyl-CoA thioesterase family p...		Potri.002G159150 [exp]	7.93	0.7754
					Potri.002G118950 [exp]	11.22	0.6835
					Potri.001G013101 [exp]	13.41	0.7094
AT1G01490			Heavy metal transport/detoxifi...		Potri.018G148900 [exp]	19.00	0.6340
AT1G65790		ARK1	receptor kinase 1 (.1)		Potri.004G024316 [exp]	41.02	0.6466
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.002G180700 [exp]	41.66	0.5791	RCOMT1.2

Compare expression of checked genes

Potri.009G052500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.