Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04590 1009 / 0 SIR sulfite reductase (.1) AT2G15620 97 / 1e-20 ATHNIR, NIR1 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G257000 [exp] 1266 / 0 AT5G04590 1054 / 0.0 sulfite reductase (.1) Potri.004G140800 [exp] 97 / 1e-20 AT2G15620 1021 / 0.0 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030131 [exp] 1097 / 0 AT5G04590 1017 / 0.0 sulfite reductase (.1) Lus10009951 [exp] 1097 / 0 AT5G04590 1020 / 0.0 sulfite reductase (.1) Lus10027360 [exp] 1013 / 0 AT5G04590 985 / 0.0 sulfite reductase (.1) Lus10014907 [exp] 262 / 6e-77 AT5G19450 896 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10014059 [exp] 86 / 2e-17 AT2G15620 960 / 0.0 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01077 [poplar] [flax] NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain PF03460 [poplar] [flax] NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Representative CDS sequence Show only first row Show all	>Potri.009G052600.4 pacid=42771210 polypeptide=Potri.009G052600.4.p locus=Potri.009G052600 ID=Potri.009G052600.4.v4.1 annot-version=v4.1 ATGACGACGGCGACGTCGTACGGAGCAGCTCATAGTGCAGTGTTGAAGGAGGGGAAGAAGATTCAGATAGGGAGTTATGGTGGATTGAGGAGTAGGAATT CAGTTGGTTTGAGTAGGAGACATGTCAATTTGTTTTCAGTTTCAATTGCTAGACCTAATCCGCTTATCAGAGCTGTCTCCACGCCAGTAAAGCCGGAGAC TGAAACTAAGCGTAGCAAGGTTGAGATAATCAAAGAACACAGCAATTTTATCAGGTACCCTCTTAATGAGGAGTTGCTCACAGATGCCCCGAACATTAAT GAGTCTGCTACACAAATAATCAAGTTCCATGGGAGCTATCAGCAGTATAACAGAGATGAACGAGGGGCAAGATCTTACTCTTTTATGCTTCGTACAAAGA ATCCATGTGGGAAAGTCCCGAACAAATTGTACTTGACCATGGATGATCTTGCTGATCAGTTTGGAATCGGAACACTTCGATTGACAACCAGGCAAACATT TCAGCTCCACGGTGTTCTAAAGAAGAACCTCAAGACTGTGATGAGCAGCATTATCCATAGCATGGGTTCAACTCTTGGTGCATGCGGTGATCTTAACAGG AATGTTTTGGCCCCTGCTGCTCCATTTGCAAGAAAAGATTACCAATTTGCACAGCAAACCGCTGATAATATTGCTGCACTTCTAACTCCCCAGTCTGGTT TCTACTATGATATGTGGGTGGATGGAGAGAAAATAATGTCGGCAGAACCTCCAGAGGTAGTGAAGGCCCGCAATGACAATTCTCATGGAACCAATTTTCC TGATTCACCAGAGCCCATCTATGGAACTCAATTCTTGCCTAGGAAGTTCAAAATCGCAGTCACTGTGCCAACAGACAACTCTGTGGACCTTCTCACAAAT GACGTTGGTGTGGTTGTTGTTACTGATGCTGATGGTGAACCTCAGGGGTTTAATTTATTTGTTGGTGGTGGTATGGGAAGAACTCATAGGCTAGAGACCA CTTTTCCTCGGTTGGCAGAACCATTGGGTTATGTACCAAAAGAAGACATTCTATGTGCAGTGAAAGCTATTGTTGTCACTCAACGAGAAAATGGGAGGAG AGATGATCGTAAATACAGTAGAATGAAATATTTGATAAGCTCCTGGGGAATTGAGAAGTTTAGAAGTGTTGTGGAGCAATATTATGGGAAGAAATTTGAG CCTTCCCGTGAGTTGCCTGAGTGGGAATTTAAAAGTTACTTGGGATGGCACGAGCAGGGTGATGGTGGCTTGTTTTGTGGGCTCCATGTTGATAGTGGTC GTATTGGGGGGAAAATGAAGGCGACATTAAGGGAAATAATAGAAAAGTACAATTTGGATGTCCGTCTCACACCAAACCAGAACGTCATCTTGTGTGGTAT TCGCAAAGCATGGAAGCGCCCAATCACCACTGCTCTTGCACAGGCTGGTTTACTGCAACCCAAGTATGTAGACCCCCTCAATTTGACTGCAATGGCATGT CCAGCTTTACCACTGTGCCCATTGGCAATAACCGAAGCTGAACGGGGAATACCTGACATCCTCAAACGTATTAGAGCTGTATTCGAGAAGGTTGGTCTCA AATACAATGAATCTGTGGTAATAAGGGCAACTGGCTGTCCCAATGGCTGTGCCAGACCATACATGGCTGAACTTGGATTTGTTGGTGATGGCCCTAATAG CTACCAGCTTTGGCTTGGGGGAACACCCAATCAAACTTCATTAGCAAGAACCTTTATGAACAAGGTTAAGATTCATGACCTTGAAAAGGTTTTGGAACCT CTGTTTTATAATTGGAAAAGGAAAAGACAATCCAAAGAATCATTTGGCGACTTCACAAACCGAGTGGGATTTGAAACTCTTCAAGAGTGGGTTGAGAAAT GGGATGGTGTGGTGGCTACACGGTCCACATACAACCTGAGACTTTTTACTGATAAGGATACATATGAAAAAATGGATGAACTTGCAAAATTGCAGAATAA GACTGCTCATCAGCTGGCCATGGAAGTTATTCGCAATTATGCTTCTGCCCAGCAAAATGGGAAAGGGGAATGA
AA sequence Show only first row Show all	>Potri.009G052600.4 pacid=42771210 polypeptide=Potri.009G052600.4.p locus=Potri.009G052600 ID=Potri.009G052600.4.v4.1 annot-version=v4.1 MTTATSYGAAHSAVLKEGKKIQIGSYGGLRSRNSVGLSRRHVNLFSVSIARPNPLIRAVSTPVKPETETKRSKVEIIKEHSNFIRYPLNEELLTDAPNIN ESATQIIKFHGSYQQYNRDERGARSYSFMLRTKNPCGKVPNKLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKNLKTVMSSIIHSMGSTLGACGDLNR NVLAPAAPFARKDYQFAQQTADNIAALLTPQSGFYYDMWVDGEKIMSAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKIAVTVPTDNSVDLLTN DVGVVVVTDADGEPQGFNLFVGGGMGRTHRLETTFPRLAEPLGYVPKEDILCAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFE PSRELPEWEFKSYLGWHEQGDGGLFCGLHVDSGRIGGKMKATLREIIEKYNLDVRLTPNQNVILCGIRKAWKRPITTALAQAGLLQPKYVDPLNLTAMAC PALPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRATGCPNGCARPYMAELGFVGDGPNSYQLWLGGTPNQTSLARTFMNKVKIHDLEKVLEP LFYNWKRKRQSKESFGDFTNRVGFETLQEWVEKWDGVVATRSTYNLRLFTDKDTYEKMDELAKLQNKTAHQLAMEVIRNYASAQQNGKGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04590		SIR	sulfite reductase (.1)		Potri.009G052600 [exp]	0	1
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Potri.010G087300 [exp]	1.41	0.9867
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Potri.005G063300 [exp]	2.44	0.9838
AT1G67090		RBCS1A	ribulose bisphosphate carboxyl...		Potri.017G114600 [exp]	2.44	0.9855
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Potri.002G145100 [exp]	5.47	0.9773
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.006G144100 [exp]	6.00	0.9818
AT3G47430		PEX11B	peroxin 11B (.1)		Potri.001G124400 [exp]	7.34	0.9694
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.018G109700 [exp]	7.93	0.9715	Pt-ALDH11.1
AT3G01500		SABP3, ATBCA1, ...	ARABIDOPSIS THALIANA SALICYLIC...		Potri.001G348900 [exp]	8.66	0.9651	CA1.3
AT1G30380		PSAK	photosystem I subunit K (.1)		Potri.018G027600 [exp]	8.83	0.9737	Pt-PSAK.1
AT4G39230			NmrA-like negative transcripti...		Potri.013G104000 [exp]	8.94	0.9696

Compare expression of checked genes

Potri.009G052600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.