Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CPK7.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19450 904 / 0 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT5G12480 903 / 0 CPK7 calmodulin-domain protein kinase 7 (.1.2) AT3G57530 828 / 0 ATCPK32, CDPK32, CPK32 calcium-dependent protein kinase 32 (.1) AT2G41860 811 / 0 CPK14 calcium-dependent protein kinase 14 (.1.2) AT1G74740 729 / 0 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT3G51850 725 / 0 CPK13 calcium-dependent protein kinase 13 (.1) AT1G18890 716 / 0 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT2G31500 661 / 0 CPK24 calcium-dependent protein kinase 24 (.1) AT5G12180 577 / 0 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 565 / 0 CPK34 calcium-dependent protein kinase 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G257100 [exp] 1013 / 0 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.016G054600 [exp] 873 / 0 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.006G052900 [exp] 852 / 0 AT3G57530 863 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.015G066200 [exp] 745 / 0 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.012G071700 [exp] 744 / 0 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.016G117200 [exp] 731 / 0 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.006G101300 [exp] 717 / 0 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.007G127000 [exp] 680 / 0 AT2G31500 744 / 0.0 calcium-dependent protein kinase 24 (.1) Potri.004G207300 [exp] 560 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027361 [exp] 930 / 0 AT5G19450 909 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10014907 [exp] 915 / 0 AT5G19450 896 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10009947 [exp] 905 / 0 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10042370 [exp] 815 / 0 AT3G57530 820 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10026742 [exp] 804 / 0 AT3G57530 793 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10030134 [exp] 791 / 0 AT5G19450 783 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10004807 [exp] 738 / 0 AT3G51850 986 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10002482 [exp] 730 / 0 AT3G51850 979 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10027808 [exp] 722 / 0 AT3G51850 962 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10008631 [exp] 709 / 0 AT1G74740 886 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.009G052700.2 pacid=42772759 polypeptide=Potri.009G052700.2.p locus=Potri.009G052700 ID=Potri.009G052700.2.v4.1 annot-version=v4.1 ATGGGTAATTGCTGTTTTACCCCTTCCGGGGCTTCTGCCTCTGAGAAGAAAGTCAAAGGTAAAAAGAAGAAGCAAAATCCATTCTTTGGTGATAGTTATG CTGTAACCAATGGATCCGGAGATGTAGATAAGCTTTGGGTCCTGAAAGAACCCACTGGCAGGGATATTTTAGCGCATTATGATCTGGGTCGTGAGCTTGG CCGTGGTGAGTTTGGTATTACATATTTGTGCACCGATGTAAACTCTGGTGACAAGTTTGCCTGCAAGTCCATATCAAAGAAGAAGCTGAGGACTGCTGTG GATATTGATGACGTGAGGAGGGAGGTGGAGATAATGAAGCATTTGCCTGCTCATCCAAATATCGTGACCTTAAAGGCTAGTTATGAGGATGATACTGCTG TGCACATTGTGATGGAATTGTGTGAGGGAGGAGAGTTGTTTGATAGGATTGTAGCGAGGGGGCATTACACAGAAAGAGCAGCTGCTGCAGTTATGCGAAC TATTGTGGAAGTTGTTCAGATGTGCCATAAGCATGGAGTCATGCATCGAGATCTCAAACCAGAGAACTTCCTATTTGCAAATAAGAAGGAAACCGCTGTG TTGAAGGCAATTGATTTTGGATTGTCAGTCTTCTTCAAACCTGGTGAGAGATTTAATGAGATAGTTGGAAGTCCTTATTACATGGCTCCAGAGATTCTAA AGCGCAACTATGGCCCTGAAGTTGATGTCTGGAGTGCTGGAGTCATTCTTTATATATTACTTTGTGGTGTCCCTCCTTTCTGGGCAGAAACTGAGCAAGG GGTAGCGCAGGCAATTATTCGCTCTTTCATTGATTTCAAGAGGGATCCTTGGCCTAGAGTTTCTGATAATGCGAAGGATCTTGTGAAGAAAATGCTTAAT CCTGATCCTAAGCTAAGGCTTACTGCTCAGCAAGTGCTCGAGCATCCTTGGATACAAAATGCAAAGAAGGCTCCAAATGTCCCACTCGGTGAGACTGTGA GAGCAAGACTCAAACAGTTTTCTGTGATGAATAAGCTCAAGAAAAGAGCCCTGAGGGTGATAGCTGAACACTTGTCGGTGGAGGAAGTAGCTGGCATAAA GGAGGCCTTTGATATGATGGACACTGGCAAAAGAGGCAGCATTAACCTTGAGGAGCTTAGGGTTGGGTTACAAAAGCTTGGCCAAAATATTGCTGATGCA GATCTTCGAATCCTTATGGAAGCTGCTGATGTTGATGGTGATGGAGCTCTAAATTATGGAGAGTTTGTTGCAATTTCAGTTCACATTAAAAAAATGGGCA ATGACGAACACCTGCATAAAGCTTTTGCATTTTTTGATCGAAACCAGAGCGGTTACATTGAGATCGAAGAGTTGCGAGAATCCTTGAATGATGATGTTGA CACCAATAATGAGGATGTTATCAATGCCATTATGCATGATGTCGACACAGACAAGGATGGGCGCATAAGTTATGAGGAGTTTGCCACGATGATGAAGGCT GGTACAGACTGGAGAAAAGCCTCAAGGCAATATTCACGGGAAAGATTTAACAATCTGAGCATAACTTTAAGGAGGGATGGATCATTGCAGGCAGCCACTT GA
AA sequence Show only first row Show all	>Potri.009G052700.2 pacid=42772759 polypeptide=Potri.009G052700.2.p locus=Potri.009G052700 ID=Potri.009G052700.2.v4.1 annot-version=v4.1 MGNCCFTPSGASASEKKVKGKKKKQNPFFGDSYAVTNGSGDVDKLWVLKEPTGRDILAHYDLGRELGRGEFGITYLCTDVNSGDKFACKSISKKKLRTAV DIDDVRREVEIMKHLPAHPNIVTLKASYEDDTAVHIVMELCEGGELFDRIVARGHYTERAAAAVMRTIVEVVQMCHKHGVMHRDLKPENFLFANKKETAV LKAIDFGLSVFFKPGERFNEIVGSPYYMAPEILKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVAQAIIRSFIDFKRDPWPRVSDNAKDLVKKMLN PDPKLRLTAQQVLEHPWIQNAKKAPNVPLGETVRARLKQFSVMNKLKKRALRVIAEHLSVEEVAGIKEAFDMMDTGKRGSINLEELRVGLQKLGQNIADA DLRILMEAADVDGDGALNYGEFVAISVHIKKMGNDEHLHKAFAFFDRNQSGYIEIEELRESLNDDVDTNNEDVINAIMHDVDTDKDGRISYEEFATMMKA GTDWRKASRQYSRERFNNLSITLRRDGSLQAAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Potri.009G052700 [exp]	0	1	CPK7.1
AT2G17730		NIP2	NEP-interacting protein 2 (.1....		Potri.007G061400 [exp]	2.00	0.9192
AT1G62045			unknown protein		Potri.004G013601 [exp]	5.19	0.9022
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.002G071900 [exp]	5.65	0.9187
AT2G16700		ADF5, ATADF5	actin depolymerizing factor 5 ...		Potri.004G173800 [exp]	7.21	0.8996	Pt-ADF5.2
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Potri.009G061500 [exp]	9.16	0.8931
AT3G50760		GATL2	galacturonosyltransferase-like...		Potri.007G031700 [exp]	13.03	0.8881
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.006G035400 [exp]	17.32	0.8987	TUB17,TUB6.1
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.016G097800 [exp]	17.43	0.8915	ALPHA.3
AT3G13130			unknown protein		Potri.001G366500 [exp]	20.34	0.8897
AT2G33990		IQD9	IQ-domain 9 (.1)		Potri.004G053000 [exp]	26.38	0.8841

Compare expression of checked genes

Potri.009G052700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.