Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20920 450 / 8e-159 translocation protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G257500 [exp] 590 / 0 AT3G20920 465 / 1e-164 translocation protein-related (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030136 [exp] 507 / 0 AT3G20920 508 / 0.0 translocation protein-related (.1.2) Lus10009945 [exp] 505 / 4e-180 AT3G20920 506 / 0.0 translocation protein-related (.1.2) Lus10014906 [exp] 501 / 1e-178 AT3G20920 501 / 3e-179 translocation protein-related (.1.2) Lus10027362 [exp] 495 / 1e-176 AT3G20920 498 / 4e-178 translocation protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03839 [poplar] [flax] Sec62 Translocation protein Sec62
Representative CDS sequence Show only first row Show all	>Potri.009G052800.1 pacid=42771445 polypeptide=Potri.009G052800.1.p locus=Potri.009G052800 ID=Potri.009G052800.1.v4.1 annot-version=v4.1 ATGAAGAAATCAGGAGGGGCAGCAGACAAGAAAAGGGTTCGAAGATCATCAGGGGCCGTGACTAATGCCTCCAGAGATCTGAACTCTGATACCCCTCCTA GGAAACAAGCTGCAAAAAAGGATGTGTTTCAGTTGTTTGCTGAGAAGGTGAGAGATCACAAGGATTTGGTATCTCGTTGGGCTGTCTTACAGGAGACCCG TGTTGAATATTTTAGAGGAAAGGATTTTGTAAGCTTTCTGAAAAATCATTCAGAGGTTAAAGATATATTAGAGTCAAATAATAATTTAGAGGTTGAAGAA ATTGCCAATACTTTATTAAGCAAGAACCTCTTAGTGCGTTGTGATCGTGTGGTGAAAACTGTTCGTCCCGGGAAGAAAAAGTTGTCTACCTGGCCAGCAC ATTTAGAGATCTTTCCAGATCAAGTATTTTCAGAAAATGATGCCTTTTTTGCATGGGCGTTTGTAAAACGGAGGCCATTATGGCAAACACTTCTCTCACT TTCCTGGCCCGTGTTGACTCTTGCAATTTGCATGTTTCCTGTATACCCACATCGGTGCAAGCTATTAATCCTCTACTCTTGTGCTGGACTTCTTTTGCTT ATTCTCTCACTTCTTTCATTGAGAGCCACAGTATTTGGTGTTCTATACCTCATTCTTGGAAAGCGTGTTTGGTTTTTCCCTAACATCCTTGCTGAAGAAG CTACTCTGGGAGAATTATTCCGTTTCTGGCCGAATAAGGATGAGGAGGAGAGGCCCAAGTGGACAACTAGACTTTTCTATGCATTAGTAGCTGTGCTTGT CATATTACTGCTGAGGCACCATGCCCCTGATGAAGCTGCTAGAGCAAGGTATCAGAAGCGGATGTCCAACATAATTGATGAAGTTCTTGAGTGGTCTCCA AGTTTGGCGCTGTCTGGAATGATGGAGAAGCAGCCAACTGTGGTCAATACCACGGAACCCAGCAATTTCACAGATTCCGGTAAAACAGACTCGGAGAAGG AACCTCCAGCAGATGATGAAGGTGGAGAAACCATCTTAGAACAACATGAGGATGAGGAAACAGAGAACATAGAGGACACTGATCAACATCAGCATCAGCA TCAAGATCATATATGA
AA sequence Show only first row Show all	>Potri.009G052800.1 pacid=42771445 polypeptide=Potri.009G052800.1.p locus=Potri.009G052800 ID=Potri.009G052800.1.v4.1 annot-version=v4.1 MKKSGGAADKKRVRRSSGAVTNASRDLNSDTPPRKQAAKKDVFQLFAEKVRDHKDLVSRWAVLQETRVEYFRGKDFVSFLKNHSEVKDILESNNNLEVEE IANTLLSKNLLVRCDRVVKTVRPGKKKLSTWPAHLEIFPDQVFSENDAFFAWAFVKRRPLWQTLLSLSWPVLTLAICMFPVYPHRCKLLILYSCAGLLLL ILSLLSLRATVFGVLYLILGKRVWFFPNILAEEATLGELFRFWPNKDEEERPKWTTRLFYALVAVLVILLLRHHAPDEAARARYQKRMSNIIDEVLEWSP SLALSGMMEKQPTVVNTTEPSNFTDSGKTDSEKEPPADDEGGETILEQHEDEETENIEDTDQHQHQHQDHI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20920			translocation protein-related ...		Potri.009G052800 [exp]	0	1
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Potri.004G176600 [exp]	9.16	0.7478
AT3G21280		UBP7	ubiquitin-specific protease 7 ...		Potri.003G033700 [exp]	10.81	0.7219	UBP6.1
AT4G39220		ATRER1A	Rer1 family protein (.1)		Potri.007G047800 [exp]	12.84	0.6812
AT4G25030			unknown protein		Potri.010G219900 [exp]	16.73	0.6957
AT1G45000			AAA-type ATPase family protein...		Potri.002G031400 [exp]	18.02	0.7088	RPT4.2
AT3G62220			Protein kinase superfamily pro...		Potri.014G114200 [exp]	22.36	0.7378
AT3G20920			translocation protein-related ...		Potri.001G257500 [exp]	25.45	0.6907
AT2G24420			DNA repair ATPase-related (.1....		Potri.018G003700 [exp]	36.05	0.6351
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Potri.006G082500 [exp]	39.11	0.6378
AT1G55340			Protein of unknown function (D...		Potri.003G221000 [exp]	45.49	0.6266

Compare expression of checked genes

Potri.009G052800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.