Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20890 353 / 1e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G66010 233 / 9e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G55340 45 / 3e-05 PHIP1 phragmoplastin interacting protein 1 (.1) AT3G12640 41 / 0.0007 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258000 [exp] 475 / 2e-172 AT3G20890 357 / 6e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G101200 [exp] 271 / 1e-91 AT5G66010 344 / 2e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009943 [exp] 394 / 2e-140 AT3G20890 328 / 9e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10009942 [exp] 390 / 6e-138 AT3G20890 313 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030140 [exp] 382 / 2e-135 AT3G20890 300 / 8e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030139 [exp] 381 / 6e-135 AT3G20890 315 / 2e-108 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Potri.009G053200.1 pacid=42771397 polypeptide=Potri.009G053200.1.p locus=Potri.009G053200 ID=Potri.009G053200.1.v4.1 annot-version=v4.1 ATGTTCTATCGAGGATATCCTGATGGACGTGAAATGGGTGCAAAACGTCAGCGAATAGCTGACAAGGGTCCTTCATTCTATGCGAACTCCCCTGGTTCAA GTTTTATGTACAATGCACCTCCCAATGGATATGCGAGCCAGCCACCTCATTTCCCTGTTGTCCGCCTCCGTGGTCTTCCTTTTGATTGCACAGAAACTGA CGTGGCTGAGTTCTTCCATGGTCTGGACATAGTTGATGTTCTTTTTGTTCACAAGGGTGGCAAGTTCAGTGGTGAAGCTTTTTGTGTTTTGGGGTATCCT CTTCAAGTTGATTTTGCACTTCAAAAGAACAGGCAGAACATGGGCAGGAGATATGTTGAGGTTTTCCGAAGTAAGAGGCAGGATTATTACAAGACAATAG CGAATGAAGTGTCAGAATCTCGTGGCTCACCACGACGAAATATCCCTAGGGCTAAATCGTATGACGAGGGAAAGGACTCAGCTGAACATACAGGAGTATT ACGATTGAGGGGACTGCCATTTTCAGCTAGCAAGGACGACATAATGGAATTCTTCAAAGATTTTGTTTTATCAGAGGATTCGATCCATATTACAATGAAT TCAGAGGGTAGGCCAACAGGGGAAGCCTTTGTGGAGTTTGCAAATGCTGAAGATTCTAAAGCAGCGATGGCCAAGGATAGGATGACTCTTGGGAGTCGTT ATATAGAGCTGTTTCCCTCATCAGTGGAGGAGTCGGATGAAGCAGTTTCAAGAGGCCGATGA
AA sequence Show only first row Show all	>Potri.009G053200.1 pacid=42771397 polypeptide=Potri.009G053200.1.p locus=Potri.009G053200 ID=Potri.009G053200.1.v4.1 annot-version=v4.1 MFYRGYPDGREMGAKRQRIADKGPSFYANSPGSSFMYNAPPNGYASQPPHFPVVRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFSGEAFCVLGYP LQVDFALQKNRQNMGRRYVEVFRSKRQDYYKTIANEVSESRGSPRRNIPRAKSYDEGKDSAEHTGVLRLRGLPFSASKDDIMEFFKDFVLSEDSIHITMN SEGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSVEESDEAVSRGR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Potri.009G053200 [exp]	0	1
AT1G03290			unknown protein		Potri.014G139000 [exp]	1.00	0.9128
AT4G38100			unknown protein		Potri.005G147801 [exp]	1.41	0.9055
AT3G54826			Zim17-type zinc finger protein...		Potri.008G037300 [exp]	7.14	0.8975
AT3G15040			Protein of unknown function, D...		Potri.006G209500 [exp]	10.19	0.8529
AT5G63050		EMB2759	embryo defective 2759 (.1.2)		Potri.012G088600 [exp]	17.32	0.8689
AT3G16350	MYB		Homeodomain-like superfamily p...		Potri.003G049100 [exp]	19.36	0.8771
AT4G27540		PRA1.H	prenylated RAB acceptor 1.H (....		Potri.011G116200 [exp]	23.49	0.8727
AT2G15270			unknown protein		Potri.001G300300 [exp]	23.83	0.8296
AT5G16790		AtTHO7	Tho complex subunit 7/Mft1p (....		Potri.013G080200 [exp]	25.25	0.8354
AT5G27990			Pre-rRNA-processing protein TS...		Potri.013G035000 [exp]	25.80	0.8291

Compare expression of checked genes

Potri.009G053200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.