Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19855 230 / 5e-77 AtRbcX2 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) AT4G04330 42 / 8e-05 AtRbcX1 homologue of cyanobacterial RbcX 1, Chaperonin-like RbcX protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258100 [exp] 403 / 5e-145 AT5G19855 259 / 2e-88 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) Potri.011G010300 [exp] 40 / 0.0003 AT4G04330 209 / 6e-70 homologue of cyanobacterial RbcX 1, Chaperonin-like RbcX protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009941 [exp] 234 / 4e-78 AT5G19855 221 / 1e-73 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) Lus10030141 [exp] 230 / 1e-76 AT5G19855 231 / 2e-77 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) Lus10027363 [exp] 219 / 1e-72 AT5G19855 200 / 1e-65 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) Lus10002563 [exp] 218 / 2e-72 AT5G19855 202 / 1e-66 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02341 [poplar] [flax] RcbX RbcX protein
Representative CDS sequence Show only first row Show all	>Potri.009G053300.8 pacid=42772656 polypeptide=Potri.009G053300.8.p locus=Potri.009G053300 ID=Potri.009G053300.8.v4.1 annot-version=v4.1 ATGGTGGGAGCTTTATCCGTGGTGGACCCACACACCAGTCCATGTTTGTGCCTGGATGCGCTGCCTACAACTAATATTGGTCTTAAGAGTAGTGGAGACT TGGTTTTGCAGAGGAGTTCAATGAAGAGAAAGCAGTTAACAAGGCCAGGATCATTGGAGTTGGGGAGTTCTTTTGTGGACTCATGGCATGATTGGAGGCT CTCATCGAAAGCTATTTCAGGAATTGTTAGTAAGAGCTCAAGGAAACAGAGAAAGGATCGGGGACTAGTGGTTGTGAACGAGTTGGGAGGGCAATATGAG GATAGTTTTGAGGATGTTAAAATGCAATTAATCAACTATTTCACATACAAAGCAGTAAGGACTGTACTTAACCAGCTCTACGAGATGAACCCAACACAAT ATACATGGCTTTACAATTTTGTTGCACAAAATAAGCCTGGAGATGGCAAGCGTTTCATTCGCTCTCTTGGGAAGGAGAAGCAGGACCTTGCTGAAAGAGT GATGGTCACACGCCTTCACTTGTATGGGAAATGGGTTAAGAAATGTGATCACGCTGAGATATATAAAGAAATCTCTGATGAGAACTTGGAGTTGATGCGT GAACGGCTCATGGAGACTGTGAAATGGCCATCAGATGATACAAACACGGAGAAGATTGGCTGA
AA sequence Show only first row Show all	>Potri.009G053300.8 pacid=42772656 polypeptide=Potri.009G053300.8.p locus=Potri.009G053300 ID=Potri.009G053300.8.v4.1 annot-version=v4.1 MVGALSVVDPHTSPCLCLDALPTTNIGLKSSGDLVLQRSSMKRKQLTRPGSLELGSSFVDSWHDWRLSSKAISGIVSKSSRKQRKDRGLVVVNELGGQYE DSFEDVKMQLINYFTYKAVRTVLNQLYEMNPTQYTWLYNFVAQNKPGDGKRFIRSLGKEKQDLAERVMVTRLHLYGKWVKKCDHAEIYKEISDENLELMR ERLMETVKWPSDDTNTEKIG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Potri.009G053300 [exp]	0	1
AT2G04039			unknown protein		Potri.014G172800 [exp]	1.00	0.9795
AT1G75460			ATP-dependent protease La (LON...		Potri.005G232800 [exp]	2.44	0.9643
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007700 [exp]	2.82	0.9728
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Potri.006G101500 [exp]	4.89	0.9563	FAD3.2
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014306 [exp]	5.29	0.9617
AT3G09870			SAUR-like auxin-responsive pro...		Potri.016G092400 [exp]	6.24	0.9288
AT2G05620		PGR5	proton gradient regulation 5 (...		Potri.008G171000 [exp]	6.48	0.9584	PGR5.2
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Potri.018G015700 [exp]	8.06	0.9592
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Potri.013G109000 [exp]	9.16	0.9582
AT5G49730		ATFRO6, FRO6	ferric reduction oxidase 6 (.1...		Potri.001G079000 [exp]	9.48	0.9553

Compare expression of checked genes

Potri.009G053300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.