Plant FIBer expression Database

Potri.009G053400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G51350 787 / 0 ARM repeat superfamily protein (.1)
AT1G09270 45 / 0.0001 IMPA-4 importin alpha isoform 4 (.1.2.3)
AT2G45720 45 / 0.0002 ARM repeat superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G001400
[exp]
44 / 0.0004 AT4G16143 849 / 0.0 importin alpha isoform 2 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027364
[exp]
764 / 0 AT1G51350 682 / 0.0 ARM repeat superfamily protein (.1)
Lus10002562
[exp]
730 / 0 AT1G51350 646 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF00514 Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence
>Potri.009G053400.1 pacid=42771094 polypeptide=Potri.009G053400.1.p locus=Potri.009G053400 ID=Potri.009G053400.1.v4.1 annot-version=v4.1
ATGCCAACCGCCAACACTACCATCCCGATCCACGGGCCCGTGGACCTCCTCACTCGTCTGGACTCACCCGACCCGGAAACAAAGCTCAAGGCGCTTAGAG
AAATAAAAAACCAGATAATTGGTAATCGCACCAAGAAGCTCTCTTTCCTCAAACTCGGCGCCGTTCCAGCTGTCGCCTCTATCCTCTCCTCCTACGCCAC
CGAAGCTGATTCCCAATTAGCCGATGCTGACGTCAGCATCAGCAACGTTATTGTCCAGTCAGCTGCGGTTCTTGGAAGCTTCGCTTGCGGCTTCGATGCC
GGCGTTCGAGCCGTCCTCGACGCCGGCTCTTTTCCTCACCTAATTCGGCTCCTCTTCAATCCTGCTGAGAAAGTGGTGGATGCAAGTGCTCGTTCACTTA
GAATGATTTATCAGTCGAAATTGGCTCCAAAGTATGAGTTTGTTCAAGAGAAAAACATGGAATTCCTCATTTCTTTAATTAATAGCGAGTGTGAAAATGT
TACTGGACTTGGTGCAAGTATCATTACTCATTCTTGCGAGACAAGTGCAGAGCAGAGGGCATTATGTGATGCCGGGGTTCTAAAGAAGTTAATTAGCCTC
CTTGAAGGTTCTCTAAGTCAGAAAAATGCTACTTTAGAGTCCCTGGCTGCAGTCTTTAAGAACAATCCTGAAGTCATCTCTAAATTCGTGGGACTTGAAA
ATGAAAGAGCTGTTGAAGGCTCTTTAAGTCAGAGAGACTCTAGTTTAGAGTCACTGGGCACAGTTCTCAAGAACAATCCTGAATCTGTCTCGAAGTTTGT
GGGACCAGAAAGTGGAAGTGCTTTAAGCTCTATAATTGAATTAACAAAGGATAGATATGCCCGGACAAGGTTGCTTGCATGCATGTGCCTGATTGTTATA
AGAAATGCTTCTCCTAACTATCTGCAAGATATAGGAATCAAAGCCAAATTAGTATATCTCTTACTTGAGCTTCTTGATGATCCTGGCCAAGTAGGAGATG
AAGCTCCCTTTGTTTTTTCTAGTCTAGTTGCAGGAAAGGAGGATTTACAGAAATTAGCTTTTGAGGACAGCGCTATAAATAAGTTTTGTAACCAATTGCA
AAAAGGTCAAGTACATCCCAAGCGCCTCCAAGGCATATTGCTTGCATTGGCTGATCTATGCTCAAAGTTGGAGAGCTGCAGATTGACATTCCTGTCATTG
AAGGCTTTGAACCAAGTGATCGATGCTCTGACTCATGATTGTGCCAATGTGCGCACATCTGCATGTATTTGCTTAAGAAGTGTCACTCGCTCAATCAAGA
ACTTGTGCACAGGTTACTTCATGAATGAAATGCTTGTTATTTCCCTCATCCGGCTTTTAGATGACCCTTCAGTGTCTGTCCAGGTCGCTGCACTTGGTGC
TATTAGTAACATAGTGGTTGATTTTACGACTCGTAAATCTACATTTATACAATGTGGAGGCATAAAACAGCTGGTTCAGCTAACAAAATCAATGGACTCA
ACTGTAAGGTTTAATGCATTATGGGCTTTGAAGAATATGATGTTTCTGGCAGATGATAGATGTAAAGAAGGGATTTTTTTAGAGCTCACTGGTTCCTTGT
TAGCAAGCCTTATATGTGACCCTGAGCCTTGTGTTCAAGAGCAAGCTTTGGCCCTTGTTCGGAATCTTGTTGATGGATGTATAAAGTCCATTGAGTATGT
GTTTGCCGAAGATGGTATTCTATTAGATGCTGTTGGAAGGCAATTACACAACGTTTCAGACGAAGTTGGAATACAGGGAATGTATCTTCTTGGCAATGTG
GCAAGTGGAAATGAGTTTCATAAGGAAGCAGTTATGCGGCAACTTCTTGCACAAGCAGATAATGGAGCCCAATCTTTCGTGATCAAGTTCTTGCAGAGCA
GTGATAGCCGGTTACGCACAGCTGCTCTCTGGGTTATAGTAAATCTCACTTTCCCTTCTTGTCCAGGTGCATTTGGTCGGCTTGTACAACTTAAGAATGC
TGGCATAATATCTCAAATAAGGAACATGGTTCATGATTCCTGCCTTGATGTGAAGCTTCGTGTAAGAACAGTGATCACTCAGTCTATGACTTTTGGCGAT
GGCCTCGCATGA
AA sequence
>Potri.009G053400.1 pacid=42771094 polypeptide=Potri.009G053400.1.p locus=Potri.009G053400 ID=Potri.009G053400.1.v4.1 annot-version=v4.1
MPTANTTIPIHGPVDLLTRLDSPDPETKLKALREIKNQIIGNRTKKLSFLKLGAVPAVASILSSYATEADSQLADADVSISNVIVQSAAVLGSFACGFDA
GVRAVLDAGSFPHLIRLLFNPAEKVVDASARSLRMIYQSKLAPKYEFVQEKNMEFLISLINSECENVTGLGASIITHSCETSAEQRALCDAGVLKKLISL
LEGSLSQKNATLESLAAVFKNNPEVISKFVGLENERAVEGSLSQRDSSLESLGTVLKNNPESVSKFVGPESGSALSSIIELTKDRYARTRLLACMCLIVI
RNASPNYLQDIGIKAKLVYLLLELLDDPGQVGDEAPFVFSSLVAGKEDLQKLAFEDSAINKFCNQLQKGQVHPKRLQGILLALADLCSKLESCRLTFLSL
KALNQVIDALTHDCANVRTSACICLRSVTRSIKNLCTGYFMNEMLVISLIRLLDDPSVSVQVAALGAISNIVVDFTTRKSTFIQCGGIKQLVQLTKSMDS
TVRFNALWALKNMMFLADDRCKEGIFLELTGSLLASLICDPEPCVQEQALALVRNLVDGCIKSIEYVFAEDGILLDAVGRQLHNVSDEVGIQGMYLLGNV
ASGNEFHKEAVMRQLLAQADNGAQSFVIKFLQSSDSRLRTAALWVIVNLTFPSCPGAFGRLVQLKNAGIISQIRNMVHDSCLDVKLRVRTVITQSMTFGD
GLA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G51350 ARM repeat superfamily protein... Potri.009G053400
[exp]
0 1
AT1G05690 BT3 BTB and TAZ domain protein 3 (... Potri.017G009700
[exp]
3.16 0.7501
AT4G19670 RING/U-box superfamily protein... Potri.012G119000
[exp]
3.60 0.7795
AT3G05090 LRS1 LATERAL ROOT STIMULATOR 1, Tra... Potri.013G033800
[exp]
7.93 0.7453
AT2G37900 Major facilitator superfamily ... Potri.006G092000
[exp]
20.14 0.7307
AT3G11760 unknown protein Potri.010G244100
[exp]
20.59 0.7302
AT2G27990 HD PNF, BLH8 POUND-FOOLISH, BEL1-like homeo... Potri.009G009800
[exp]
21.49 0.7316
AT2G40460 Major facilitator superfamily ... Potri.019G055800
[exp]
24.81 0.7180
AT2G02220 ATPSKR1 phytosulfokin receptor 1 (.1) Potri.017G050700
[exp]
25.27 0.7267
AT5G15270 RNA-binding KH domain-containi... Potri.004G123400
[exp]
25.39 0.7345
AT2G44730 Trihelix Alcohol dehydrogenase transcri... Potri.001G150600
[exp]
27.74 0.7120

Potri.009G053400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.