Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12850 475 / 6e-160 C3HZnF PEI1 CCCH-type zinc finger protein with ARM repeat domain (.1) AT2G41900 454 / 2e-151 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) AT2G40140 314 / 7e-99 C3HZnF ATSZF2, CZF1, ZFAR1 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) AT5G58620 253 / 1e-75 C3HZnF zinc finger (CCCH-type) family protein (.1) AT3G55980 221 / 4e-64 C3HZnF ATSZF1 salt-inducible zinc finger 1 (.1) AT4G29190 174 / 5e-49 C3HZnF AtOZF2 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G25900 173 / 6e-49 C3HZnF ATTZF1, ATCTH A. THALIANA TANDEM ZINC FINGER PROTEIN 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT2G19810 173 / 2e-48 C3HZnF AtOZF1 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) AT5G07500 166 / 6e-47 C3HZnF PEI1 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G03790 166 / 1e-45 C3HZnF SOM SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258400 [exp] 817 / 0 AT5G12850 506 / 4e-171 CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G266700 [exp] 506 / 1e-171 AT2G41900 708 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.016G053700 [exp] 495 / 3e-167 AT2G41900 820 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053800 [exp] 484 / 8e-163 AT2G41900 817 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053900 [exp] 479 / 2e-161 AT2G41900 791 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.009G061000 [exp] 469 / 3e-157 AT2G41900 672 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.009G046800 [exp] 357 / 5e-114 AT5G58620 553 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.001G252600 [exp] 347 / 6e-110 AT5G58620 572 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.010G187900 [exp] 326 / 1e-102 AT2G40140 570 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019709 [exp] 457 / 7e-152 AT2G41900 759 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Lus10028970 [exp] 327 / 5e-103 AT2G40140 615 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10007493 [exp] 324 / 4e-102 AT2G40140 614 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10040662 [exp] 190 / 3e-54 AT5G58620 341 / 2e-112 zinc finger (CCCH-type) family protein (.1) Lus10035006 [exp] 176 / 4e-49 AT2G19810 380 / 2e-131 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10012922 [exp] 173 / 4e-48 AT2G19810 387 / 9e-134 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10017708 [exp] 164 / 1e-45 AT1G03790 252 / 7e-82 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10018621 [exp] 164 / 5e-45 AT1G03790 245 / 3e-78 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10033665 [exp] 161 / 2e-44 AT1G03790 240 / 6e-77 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10031017 [exp] 43 / 0.001 AT2G41370 701 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.009G053500.1 pacid=42772943 polypeptide=Potri.009G053500.1.p locus=Potri.009G053500 ID=Potri.009G053500.1.v4.1 annot-version=v4.1 ATGGCTCCATTGTCTCCCATGGAAAGCATTTCTTTTACTAAAGATATGAGCAACTGGATTGACACCGAAGATTCTTTTTCCTCGTTGCTTGAGTTTGCGG CGGATAACAATGTTGAGGGTTTCAAGCGATCAGTGTTTGATGAATCCGAGATTAAGGAGGTTGGCCTATGGTACGGTCGCCTGGGGGCATCGAGGAAGAT GGTTCTCGAGCAGAGAACCCCTTTGATGATCGCTGCTAAATATGGCAGTGCTGATGTTTTGAAGCTACTACTTTCTCTACCTGAGGTAGATGTAAATTTC TGTTGTGGCCCTGATAAGAGCACTGCTCTTCATTGTGCTGCTTCGGGTGGATCTGTTAATGCCACCAATGTTGTCAAGTTGCTATTACTTGCAGGTGCTG ATTCTAATGCCACTGATGCCAATAGATGTCGCCCAATTGATGTTGTTGTTGCTCCCTCAAAATTTCCTGACCTGAAAGGTGCACTTGAAGAGCTGTTGAA CAATGGTTCTGTCTGTCAATGGGATACGATGCCAGTTTCAAGTCCTAGTTGGAGACCTAGTTCACCTTCTCTGTCATCATCAACTGATGAAGGTTCCTTG TCCTCCCCCGCGGGTTCTATTTTATCGCCAGTTACCTGTAAGCCTAATGATGTACACGTTTCTCCTGCTAAAAAAGAATACCCCGTTGATCCAACTATTC CTGATATAAAGAACTGTGTTTATGCTAGCGATGAGTTTAGGATGTTCTCCTTTAAGATCCGACCTTGCTGCCGGGCCTACGCCCATGACTGGACTGGGTG TCCTTTTGTTCATCCCGGTGAGAATGCAAGGAGAAGAGACCCGAGGAAGTTCCATTACAGTTGTATGCCATGTCCAGATCACAAGAAGGGGACATGTAGG CGAGGGGATTTGTGTGAATACGCTCATGGGATTTTCGAGTGCTGGTTACACCCTAGCCAATACAAGACTCGACTTTGCAAGGAAGGAAGAAGTTGCATGC GTCGGGTGTGTTTCTTTGCTCACGCACCTGATGAACAGAGACCCCTCAATATGTCTACTGGAGCTGCAGTCTCATCCTCTAAAGTAGATGCTATGGATTT TACTGCAGCCTCGAACTTGTCGCCTAGCTCATTTTCTCCCACATCACCTTCTACGTTCGCTGCACTAAAGTATCTTTCCAGCAACAATTCACACTCATTG GTGCCTTGGCCTCGGCAAACTATCCCAAATTTTCATAGCAGTCTTCAAGCAAGCTGTCTGAGAAGTTCTCTCAATGCAAGAGACATTTCATCCGAGGATC TTACTGGCTTATGGGATTTTGGATTCCAGCAACGACGTCCGCCCCTAAACGAGCCATCCCCTCTCTCTCAGCCACTTTACAATGGTTCCTCTACCAATCT TTTTTCTTCTTCAAACACCCTGAATCACTCAAATCTAGACAAGATTTTCTCTGAAAATGTCTCATCTCCTCATCACACTGACCAATTGGGTGGTGGTGGT GCATTTGTTTTCTCTCCCACATATTCTTCAGCAGCTCTTAATCAACTGCAGCAGCAGCAAAGCATAATATATCCAATGCAGGGGGTCTCTCCTTACATCA ATGATCATGTGTCCTCTTTAGGCTTTCAGCTGTCTGCTCATGTTCAGCGAGAGAAGATGCTACAACAATTACAAAGCAGTCTACTCTCACAGAAACTTGG TTCTAAAGCATCATATGACCTTGGATTCAATGGTACAAATTCACGGTCAATATGGGAATCTGACGACAGGAATGTAGATAGGTTTGTTCAAGCAGATGAA ATGGGTCGGATACACACACCATGTTCAATCAAGCACGACGGAGAGGAGCCTGATGTGTCATGGGTTCATCAAGTGTTGAAGGACTAG
AA sequence Show only first row Show all	>Potri.009G053500.1 pacid=42772943 polypeptide=Potri.009G053500.1.p locus=Potri.009G053500 ID=Potri.009G053500.1.v4.1 annot-version=v4.1 MAPLSPMESISFTKDMSNWIDTEDSFSSLLEFAADNNVEGFKRSVFDESEIKEVGLWYGRLGASRKMVLEQRTPLMIAAKYGSADVLKLLLSLPEVDVNF CCGPDKSTALHCAASGGSVNATNVVKLLLLAGADSNATDANRCRPIDVVVAPSKFPDLKGALEELLNNGSVCQWDTMPVSSPSWRPSSPSLSSSTDEGSL SSPAGSILSPVTCKPNDVHVSPAKKEYPVDPTIPDIKNCVYASDEFRMFSFKIRPCCRAYAHDWTGCPFVHPGENARRRDPRKFHYSCMPCPDHKKGTCR RGDLCEYAHGIFECWLHPSQYKTRLCKEGRSCMRRVCFFAHAPDEQRPLNMSTGAAVSSSKVDAMDFTAASNLSPSSFSPTSPSTFAALKYLSSNNSHSL VPWPRQTIPNFHSSLQASCLRSSLNARDISSEDLTGLWDFGFQQRRPPLNEPSPLSQPLYNGSSTNLFSSSNTLNHSNLDKIFSENVSSPHHTDQLGGGG AFVFSPTYSSAALNQLQQQQSIIYPMQGVSPYINDHVSSLGFQLSAHVQREKMLQQLQSSLLSQKLGSKASYDLGFNGTNSRSIWESDDRNVDRFVQADE MGRIHTPCSIKHDGEEPDVSWVHQVLKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12850	C3HZnF	PEI1	CCCH-type zinc finger protein ...		Potri.009G053500 [exp]	0	1
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.009G012100 [exp]	14.52	0.7510	PtrFLA14-9,FLA14.9
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.004G117200 [exp]	21.35	0.7482
AT3G47690		ATEB1A, ATEB1H2	ATEB1-HOMOLOG2, ARABIDOPSIS TH...		Potri.012G069400 [exp]	28.70	0.7375	Pt-ATEB1.3
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Potri.010G192900 [exp]	33.70	0.5443
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120900 [exp]	36.74	0.7344	Pt-FLA14.3
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.019G121200 [exp]	38.02	0.7335	FLA14.11
AT5G05820			Nucleotide-sugar transporter f...		Potri.009G040800 [exp]	40.55	0.7289
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.013G151432 [exp]	51.08	0.7274
AT3G15810			Protein of unknown function (D...		Potri.006G067000 [exp]	54.49	0.7228
					Potri.015G001700 [exp]	56.99	0.7166

Compare expression of checked genes

Potri.009G053500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.