Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12860 801 / 0 DIT1 dicarboxylate transporter 1 (.1.2) AT5G64290 431 / 2e-145 DCT, DIT2.1 dicarboxylate transport 2.1 (.1) AT5G64280 379 / 3e-125 DIT2.2 dicarboxylate transporter 2.2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258600 [exp] 885 / 0 AT5G12860 777 / 0.0 dicarboxylate transporter 1 (.1.2) Potri.017G050500 [exp] 414 / 1e-138 AT5G64290 707 / 0.0 dicarboxylate transport 2.1 (.1) Potri.001G310600 [exp] 389 / 7e-129 AT5G64290 652 / 0.0 dicarboxylate transport 2.1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002560 [exp] 779 / 0 AT5G12860 841 / 0.0 dicarboxylate transporter 1 (.1.2) Lus10027368 [exp] 778 / 0 AT5G12860 838 / 0.0 dicarboxylate transporter 1 (.1.2) Lus10003967 [exp] 433 / 4e-146 AT5G64290 842 / 0.0 dicarboxylate transport 2.1 (.1) Lus10023779 [exp] 179 / 1e-51 AT5G64290 326 / 1e-108 dicarboxylate transport 2.1 (.1) Lus10023778 [exp] 121 / 3e-32 AT5G64290 256 / 7e-84 dicarboxylate transport 2.1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [poplar] [flax] IT PF03600 [poplar] [flax] CitMHS Citrate transporter
Representative CDS sequence Show only first row Show all	>Potri.009G053800.1 pacid=42771018 polypeptide=Potri.009G053800.1.p locus=Potri.009G053800 ID=Potri.009G053800.1.v4.1 annot-version=v4.1 ATGGCGTCGTTTGCTCTGACATCATCTTCTCTTTCCTTCAACAACTCCCTCCCTTGTCTCAAATCCCGCTCTCTCTCACACCTGAGATCCACCGCACCAC ATCCCCTCTCTTTCCGTCCAAATCTCCCAAAACTCTCTACTGTCTCTCCCTTACTCCCAAGATTCTCCAAATCTAAAATTACAACATCCACCCGGAAAAT CTCTAACTTCTCAGTAAAAGCATCAGCATCTGCAGCATCACCGTCACCCGCACCAACATCAATTACACCTGCCTCACCGCCATGGCAAGGAGCAGCCATG AAACCTTTACTAGCATCCATCGCGACAGGTGTCATTCTCTGGTTCGTTCCTGTTCCCGCGGGAGTTACGAAACCAGCATGGCAGCTGCTCGCAATTTTTC TTGCTACAATAGTCGGAATCATCACGCAACCTTTACCGCTTGGAGCGGTAGCTTTGATGGGTTTAGGCGCTTCAGTTCTAACAAAAACCCTCACTTTCTC CGCCGCGTTTTCCGCATTCGGTGATCCAATCCCTTGGTTAATTGCACTCGCTTTCTTCTTCGCGCGTGGATTTATCAAAACCGGACTTGGTAACCGAATT GCGTATCAATTTGTGTCTCTGTTTGGATCTTCTTCGTTAGGGTTAGGTTACAGTCTTGTTTTTAGTGAAGCTTTACTAGCGCCGGCGATTCCTTCTGTTT CTGCACGAGCAGGAGGGATATTTTTGCCGCTAGTGAAGTCACTCTGTGTTGCTTGTGGTAGTAATGCGGGTGATGGGACGGAGCATAAGCTTGGTTCGTG GTTAATGTTAACTTGTTTCCAAACATCAGTGATTTCGTCTTCCATGTTTTTGACAGCTATGGCTGCGAATCCTCTGAGTGCTACTTTGACATTAAATACG ATTAAACAAACAATTGGGTGGACGGATTGGGCCAAGGCTGCGATTGTGCCTGGATTGGTTTCGTTGATTGTTGTTCCGTTGATTTTGTATTTCATTTATC CGCCAACTGTCAAGACTAGTCCTGATGCACCTAAATTGGCTAGGGAGAAGTTGGAGAAGATGGGACCCATGTCTACTAATGAAATTATTATGGCTGGCAC TCTGTTTCTCACGGTGGGACTCTGGATTTTTGGTGGGATGCTGAATGTGGATGCTGTTACTGCTGCTATTCTTGGATTGTCTGTCCTTCTTGTCACTGGC GTAGTGACATGGAAGGAGTGCTTAGCTGAAGCAGTTGCCTGGGATACCTTGACATGGTTTGCTGCCCTCATTGCCATGGCTGGGTATCTTAACAAATATG GTCTCATCTCCTGGTTCAGCCAAACTGTAGTTAAGTTTGTTGGTGGACTCGGTTTATCGTGGCAGCTATCTTTTGGAATTTTGGTTCTTCTCTACTTCTA CTCCCACTACTTCTTTGCCAGTGGAGCAGCTCACATCGGTGCCATGTTTACAGCATTCCTGTCTGTTGCCAGTGCTCTAGGTACTCCTCCATTATTTGGA GCCATGGTGCTCGCCTTCTTTTCCAACCTCATGGGCGGCCTTACACACTATGGAATCGGATCTGCACCTGTTTTCTATGGTGCCAACTATGTACCTCTGG CCAAATGGTGGGGCTATGGGTTCCTCATATCTGTTGTCAACATAATTATCTGGCTTGGGGTTGGAGGGGTTTGGTGGAAGTTCATTGGCTTGTGGTAG
AA sequence Show only first row Show all	>Potri.009G053800.1 pacid=42771018 polypeptide=Potri.009G053800.1.p locus=Potri.009G053800 ID=Potri.009G053800.1.v4.1 annot-version=v4.1 MASFALTSSSLSFNNSLPCLKSRSLSHLRSTAPHPLSFRPNLPKLSTVSPLLPRFSKSKITTSTRKISNFSVKASASAASPSPAPTSITPASPPWQGAAM KPLLASIATGVILWFVPVPAGVTKPAWQLLAIFLATIVGIITQPLPLGAVALMGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRI AYQFVSLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNAGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNT IKQTIGWTDWAKAAIVPGLVSLIVVPLILYFIYPPTVKTSPDAPKLAREKLEKMGPMSTNEIIMAGTLFLTVGLWIFGGMLNVDAVTAAILGLSVLLVTG VVTWKECLAEAVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKFVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPLFG AMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFLISVVNIIIWLGVGGVWWKFIGLW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Potri.009G053800 [exp]	0	1
AT1G64500			Glutaredoxin family protein (....		Potri.001G088900 [exp]	2.82	0.9583
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Potri.005G237300 [exp]	4.00	0.9505
AT5G46240		KAT1	potassium channel in Arabidops...		Potri.004G132200 [exp]	4.47	0.9297	Pt-KAT1.1
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Potri.016G083900 [exp]	4.47	0.9380
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Potri.001G124200 [exp]	5.47	0.9221
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Potri.001G424700 [exp]	7.34	0.9504
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Potri.017G107500 [exp]	7.54	0.9298
AT3G52740			unknown protein		Potri.004G202900 [exp]	9.38	0.9496
AT5G40250			RING/U-box superfamily protein...		Potri.015G073600 [exp]	10.86	0.9009
AT5G25840			Protein of unknown function (D...		Potri.003G050200 [exp]	10.95	0.9353

Compare expression of checked genes

Potri.009G053800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.