Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50920 1048 / 0 Nucleolar GTP-binding protein (.1) AT1G10300 925 / 0 Nucleolar GTP-binding protein (.1) AT1G80770 125 / 1e-30 PDE318 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G23860 91 / 2e-20 GTP-binding protein-related (.1) AT4G39520 49 / 5e-06 GTP-binding protein-related (.1) AT1G17470 49 / 9e-06 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT1G72660 48 / 1e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G78010 48 / 2e-05 tRNA modification GTPase, putative (.1) AT1G07615 48 / 2e-05 GTP-binding protein Obg/CgtA (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258900 [exp] 1223 / 0 AT1G50920 999 / 0.0 Nucleolar GTP-binding protein (.1) Potri.002G134900 [exp] 123 / 6e-30 AT1G80770 576 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G080900 [exp] 50 / 4e-06 AT4G39520 647 / 0.0 GTP-binding protein-related (.1) Potri.001G239600 [exp] 50 / 5e-06 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.001G170300 [exp] 47 / 2e-05 AT1G72660 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G063500 [exp] 47 / 3e-05 AT1G72660 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002558 [exp] 1087 / 0 AT1G50920 1039 / 0.0 Nucleolar GTP-binding protein (.1) Lus10027370 [exp] 1075 / 0 AT1G50920 1034 / 0.0 Nucleolar GTP-binding protein (.1) Lus10038748 [exp] 910 / 0 AT1G50920 940 / 0.0 Nucleolar GTP-binding protein (.1) Lus10007959 [exp] 515 / 1e-180 AT1G50920 498 / 2e-174 Nucleolar GTP-binding protein (.1) Lus10039110 [exp] 498 / 7e-174 AT1G50920 489 / 1e-170 Nucleolar GTP-binding protein (.1) Lus10007958 [exp] 315 / 2e-101 AT1G50920 322 / 7e-105 Nucleolar GTP-binding protein (.1) Lus10019508 [exp] 120 / 5e-28 AT1G80770 560 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043354 [exp] 119 / 2e-27 AT1G80770 550 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10005800 [exp] 49 / 1e-05 AT4G39520 682 / 0.0 GTP-binding protein-related (.1) Lus10006801 [exp] 49 / 1e-05 AT4G39520 655 / 0.0 GTP-binding protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF06858 [poplar] [flax] NOG1 Nucleolar GTP-binding protein 1 (NOG1) CL0023 [poplar] [flax] PF08155 [poplar] [flax] NOGCT NOGCT (NUC087) domain
Representative CDS sequence Show only first row Show all	>Potri.009G054000.6 pacid=42771978 polypeptide=Potri.009G054000.6.p locus=Potri.009G054000 ID=Potri.009G054000.6.v4.1 annot-version=v4.1 ATGGTGCAGTATAATTTTAAGAAGATTACAGTGGTCCCTAAAGGGAAGGATTTTATTGATATCATCCTTTCTCGGACCCAAAGGCAAACACCGACTGTTG TCCATAAGGGTTATGCTATTTCTCGGCTCCGGCAGTTTTACATGCGGAAGGTGAAGTATACTCAGTCGAATTTCCATGAGAAGCTTTCGACAATCATTGA TGAGTTCCCTCGTCTTGATGGTATCCACCCGTTTTATGGCGACCTCCTTCATGTGCTATACAATAAGGATCATTACAAGCTTGCCCTTGGTCAGATTAAT ACTGCCAGGAATCTTATTAGCAAGATTGCTAAAGATTATGTCAAGTTGTTGAAGTATGGTGATTCGTTGTATCGGTGCAAGTCTTTGAAGGTTGCTGCGC TTGGCCGAATGTGCACTGTTATTAAGAGGATTGGCCCGAGTTTAGCTTACTTGGAGCAAATCAGACAGCATATGGCAAGGCTACCTTCAATAGATCCAAA TACCCGGACAGTCTTGATTTGTGGGTATCCTAACGTTGGGAAGAGCTCTTTCATCAACAAGATCACCAGGGCAGATGTGGATGTTCAACCTTATGCATTC ACTACCAAGTCACTCTTTGTAGGTCACACAGATTACAAGTATCTGAGGTACCAAGTGATAGATACACCGGGGATTTTGGATCGGCCTTTTGAGGATCGTA ACATTATTGAGATGTGCAGCATCACAGCTCTGGCACATCTTCGAGCTGCTGTGTTATTCTTCTTGGATGTCTCTGGGTCATGTGGCTATAGCATTGCTCA ACAGGCTGCTTTATTTCATAGCATTAAGTCTTTGTTTATGAACAAACCGTTGACCATCGTCTGCAACAAGACTGACCTGCAACCACTTGACGGGATTTCT GAGGAAGACATGAAGTTGGTCATGGAGATGAAATCAGAAGCTATGAAGACTCTAGTTGCTCAAGGAGGTGAAGCTACCAATGACGCTGATGTTCTTCTGA CCATGAGTACCTTGACTGAGGATGGGGTGATTGCTGTGAAGAATGCTGCTTGCGAGAGATTGTTGAATCAGCGAGTGGAATTGAAGATGAAATCCAAAAA AATAAATGACTGCTTGAATCGGTTCCATGTTGCAATGCCAAAGCCACGTGATCAAAGGGAAAGGCCACCTTGTATACCTCAAGCAGTTTTGGAAGCTAAA GCGAAGGAGGCAGCGGAGAAGGAGAAAAGAAAAACAGAAAAGGATTTGGAGGATGAGAATGGTGGTGCTGGTGTATACTCTGCCAGTTTGAAGAAGAATT ACATCTTAGCCAATGATGAATGGAAAGAAGATGTACTCCCAGAAATTCTTGATGGTCACAATGTGTATGACTTCATTGATCCTGATATTTTGCAAAGGCT TGAAGAGTTGGAAAGTGAAGAAGGTATCCGACAGGCAGAGGAGGGAGATGAAGATTTTGAGCTGGATGGTGAGGAATTAACCCCGGAAGAGAAAGAAGCA TTGTCTGAGATCAGGAAAAAGAAAAGCTTGCTCATTCAAGAGCATAGAATGAAGAAAAGCACTGCAGAGAGCCGGCCCACTGTACCTAGAAAATTTGACA AGGACAGGAAGTTTACGACAAAAAGGATGGGGAGGCAGCTGTCAGCTATGGGAGTGGATCCTTCGAAAGCAATTACTCGTCTTCGTGAGAGGTCACTCTC GAGGAAGGGCCGCAAAAGAGAGAGGTCAACTGACAGGGAACATGATGGTGGTGATGCTATGGATGTGGACCAGCCAAATAAGAAGCTGCGTCTGAGATCT ACATCTCGCTCTAGGTCGAGGTCACGGCCTCCAGGTGAGGTTGTTCCAGGAGAGGGCTTCAAGGACTCGGTTCAAAAAAACAAGGCCCTTAAGCTTTTCA AGAACTCTGCTAAAAAGAGGAACAAGGATGCTAGACGTGGAGAGGCAGATAGAGTTATTCCTACACTCAAACCAAAGCATTTGTTTTCTGGGAAACGTTC TATTGGAAAAACTGAAAGGCGTTAA
AA sequence Show only first row Show all	>Potri.009G054000.6 pacid=42771978 polypeptide=Potri.009G054000.6.p locus=Potri.009G054000 ID=Potri.009G054000.6.v4.1 annot-version=v4.1 MVQYNFKKITVVPKGKDFIDIILSRTQRQTPTVVHKGYAISRLRQFYMRKVKYTQSNFHEKLSTIIDEFPRLDGIHPFYGDLLHVLYNKDHYKLALGQIN TARNLISKIAKDYVKLLKYGDSLYRCKSLKVAALGRMCTVIKRIGPSLAYLEQIRQHMARLPSIDPNTRTVLICGYPNVGKSSFINKITRADVDVQPYAF TTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRAAVLFFLDVSGSCGYSIAQQAALFHSIKSLFMNKPLTIVCNKTDLQPLDGIS EEDMKLVMEMKSEAMKTLVAQGGEATNDADVLLTMSTLTEDGVIAVKNAACERLLNQRVELKMKSKKINDCLNRFHVAMPKPRDQRERPPCIPQAVLEAK AKEAAEKEKRKTEKDLEDENGGAGVYSASLKKNYILANDEWKEDVLPEILDGHNVYDFIDPDILQRLEELESEEGIRQAEEGDEDFELDGEELTPEEKEA LSEIRKKKSLLIQEHRMKKSTAESRPTVPRKFDKDRKFTTKRMGRQLSAMGVDPSKAITRLRERSLSRKGRKRERSTDREHDGGDAMDVDQPNKKLRLRS TSRSRSRSRPPGEVVPGEGFKDSVQKNKALKLFKNSAKKRNKDARRGEADRVIPTLKPKHLFSGKRSIGKTERR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50920			Nucleolar GTP-binding protein ...		Potri.009G054000 [exp]	0	1
AT5G61330			rRNA processing protein-relate...		Potri.019G085100 [exp]	1.00	0.8270
AT3G16840			P-loop containing nucleoside t...		Potri.010G063600 [exp]	3.46	0.7908
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Potri.015G133400 [exp]	6.00	0.7583	PRH75.2
AT4G32610			copper ion binding (.1)		Potri.006G246300 [exp]	6.70	0.7310
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Potri.003G098800 [exp]	6.92	0.7761
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Potri.013G145300 [exp]	8.48	0.7729
AT5G05210			Surfeit locus protein 6 (.1.2)		Potri.010G064100 [exp]	9.21	0.7688
AT1G69070			unknown protein		Potri.010G140100 [exp]	10.24	0.7567
AT1G29320			Transducin/WD40 repeat-like su...		Potri.015G092400 [exp]	11.48	0.7358
AT3G56990		EDA7	embryo sac development arrest ...		Potri.016G037400 [exp]	11.83	0.7438

Compare expression of checked genes

Potri.009G054000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.