Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12080 812 / 0 EMB2738 embryo defective 2738, GTP-binding family protein (.1.2) AT5G39960 196 / 3e-54 GTP binding;GTP binding (.1) AT1G78010 88 / 5e-18 tRNA modification GTPase, putative (.1) AT5G66470 64 / 2e-10 RNA binding;GTP binding (.1) AT2G22870 51 / 2e-06 EMB2001 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G52980 49 / 1e-05 AtNug2 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) AT1G80770 46 / 6e-05 PDE318 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230600 [exp] 201 / 6e-56 AT5G39960 787 / 0.0 GTP binding;GTP binding (.1) Potri.002G092600 [exp] 73 / 4e-13 AT1G78010 688 / 0.0 tRNA modification GTPase, putative (.1) Potri.007G021900 [exp] 64 / 2e-10 AT5G66470 535 / 0.0 RNA binding;GTP binding (.1) Potri.005G209900 [exp] 48 / 1e-05 AT4G02790 476 / 5e-169 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Potri.002G134900 [exp] 47 / 3e-05 AT1G80770 576 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G402500 [exp] 46 / 8e-05 AT1G52980 811 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002557 [exp] 859 / 0 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10027371 [exp] 853 / 0 AT3G12080 874 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10014634 [exp] 153 / 4e-39 AT5G39960 634 / 0.0 GTP binding;GTP binding (.1) Lus10029578 [exp] 69 / 6e-12 AT1G78010 677 / 0.0 tRNA modification GTPase, putative (.1) Lus10006309 [exp] 68 / 1e-11 AT1G78010 669 / 0.0 tRNA modification GTPase, putative (.1) Lus10014289 [exp] 58 / 1e-08 AT5G66470 587 / 0.0 RNA binding;GTP binding (.1) Lus10025995 [exp] 57 / 4e-08 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10033794 [exp] 54 / 4e-08 AT5G39960 258 / 5e-83 GTP binding;GTP binding (.1) Lus10014672 [exp] 48 / 2e-05 AT4G02790 414 / 8e-142 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10006927 [exp] 47 / 3e-05 AT4G02790 462 / 2e-164 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase CL0023 [poplar] [flax] PF14714 [poplar] [flax] KH_dom-like KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
Representative CDS sequence Show only first row Show all	>Potri.009G054200.2 pacid=42770775 polypeptide=Potri.009G054200.2.p locus=Potri.009G054200 ID=Potri.009G054200.2.v4.1 annot-version=v4.1 ATGTTAGCAGCTACAGGTACAGTAAGCAAGCTCTTCTCCTCCTCCTCCCTCCCATTTTCATTTCCATTTCCTCTCTGTCCCAAAAAAACTTCCCTTTCCC TCCTCTCCTCACAGAATCCTCCCATTTCCTTCCTCTCTTCTCTCTCTTTCCCCAAATTAACCCCTCTCAAATCCTCCGCCAACACCACTCAACATTTCGA AGAAGAAGAAGTCGAAGAAGAAGAAGAAGAAGAAGAAGATATCGTTAGTGAAACAGAAATCGATGAATATGAAAGTGACATTGATATCGAAGACCTCGAG AAAGAAGCTAAATTCGCCGTTAAAGAGTTATCTACCTCCTTGTCTCGCCAATTAACAATCGAAGATGACACTGATGAGAAAAGGGAAAGTAGGAAGCAGA AGCGAAAAAAAGCTACTTCTAAAGATATCCCTGACCATCTTCTTCCAAAAGTTGCAATTGTTGGACGGCCAAATGTTGGTAAATCAGCGCTATTCAACTG TCTTGTTGGGGGGAATAGGGCAATTGTGGTGGATGAACCTGGGGTTACTCGGGACCGTTTGTATGGTAGATCTTTTTGGGGAGAACATGAATTTATGGTG GTGGATACTGGAGGTGTTGTCACAGTATCAAAGTCACAAGCTAATGTTATGGAAGATTTGGCTATCTCAACAACCATTGGCATGGATGGGATTCCACTTG CCTCGAGAGAGGCAGCAGTTGCTAGAATGCCCTCTATGATTGAGAAACAAGCTACTGCAGCTGTGGAAGAATCATCTGTCATTATATTCCTTGTTGATGG CCAGGCAGGTCTAACAGCAGCTGATGTGGAGATAGCAGACTGGTTGCGCAGGAATTACTCGAACAAGTGTATTATCCTGGCAGTGAACAAGTGTGAATCT CCACGTAAAGGAATCATGCAAGCATCAGAATTTTGGTCGTTAGGGTTCTCGCCGCTTCCTATTTCTGCGATATCAGGGACTGGAACAGGAGAACTTCTTG ATCTTGTGTGTTCCAGACTGGGAAAAGTTGAGGCTCCAGAAAATCTCAATGAAGAAGAAACTTACATTCCTGCCATTGCAATTGTTGGTCGGCCAAATGT TGGTAAAAGTAGCATTTTGAATGCATTGGTTGGAGAGGATAGAACAATTGTTAGTCCCATCAGTGGCACTACTCGTGATGCTATTGATACTGAATTTGTA GGACCAGATGGCCAGAAGTTTCTGCTTATTGATACGGCTGGCATCAGAAGGAGGGCAGCAGTAGCTTCATCAGGTAGTGTGACAGAGGCTTTATCAGTGA ATCGAGCATTTCGTGGCATTCGCCGTTCCGATGTCGTTGCTCTTGTCATTGAGGCCATGGCTTGTATCACAGAACAGGATTACAGGATTGCTGAAAGGAT AGAGAAAGAAGGAAAGGGTTGCCTGATTGTTGTGAACAAATGGGATACAATACCCAATAAAAACCAGCAGACTGCAACATACTATGAACAAGATGTTAGG GAGAAGCTTCGTCTTCTTCATTGGGCTCCTATCGTTTACTCAACTGCAATTGCTGGTCATAATGTTGAGAAGATCATTGTTGCTGCAAGTACAGTTGAAA AGGAAAGATCAAGAAGGCTAGGTACTTCTATACTGAATCAAGTGGTCCGAGAAGCATTGGCTTTTAAACCCCCTCCTAGGACGCGTGGTGGCAAGAGAGG GCGTGTTTATTATTGCACTCAGGCTGCTATTAGACCACCCACATTTGTTTTCTTTGTAAATGATTCAAACCTTTTTCCTGAGACGTACCGACGCTATATG GAGAAGCAACTGCGTTCAGATGCTGGGTTTTCTGGTACACCAATTCGACTACTTTGGCGTAGCAGAAGAAAAATGGAAAAAGATGAAGTCAAGGGTGCAA CAAGACCACAAGTTAATCTTACACCAGGCAGCGGAAAATTGGCAGTAGCTACATGA
AA sequence Show only first row Show all	>Potri.009G054200.2 pacid=42770775 polypeptide=Potri.009G054200.2.p locus=Potri.009G054200 ID=Potri.009G054200.2.v4.1 annot-version=v4.1 MLAATGTVSKLFSSSSLPFSFPFPLCPKKTSLSLLSSQNPPISFLSSLSFPKLTPLKSSANTTQHFEEEEVEEEEEEEEDIVSETEIDEYESDIDIEDLE KEAKFAVKELSTSLSRQLTIEDDTDEKRESRKQKRKKATSKDIPDHLLPKVAIVGRPNVGKSALFNCLVGGNRAIVVDEPGVTRDRLYGRSFWGEHEFMV VDTGGVVTVSKSQANVMEDLAISTTIGMDGIPLASREAAVARMPSMIEKQATAAVEESSVIIFLVDGQAGLTAADVEIADWLRRNYSNKCIILAVNKCES PRKGIMQASEFWSLGFSPLPISAISGTGTGELLDLVCSRLGKVEAPENLNEEETYIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFV GPDGQKFLLIDTAGIRRRAAVASSGSVTEALSVNRAFRGIRRSDVVALVIEAMACITEQDYRIAERIEKEGKGCLIVVNKWDTIPNKNQQTATYYEQDVR EKLRLLHWAPIVYSTAIAGHNVEKIIVAASTVEKERSRRLGTSILNQVVREALAFKPPPRTRGGKRGRVYYCTQAAIRPPTFVFFVNDSNLFPETYRRYM EKQLRSDAGFSGTPIRLLWRSRRKMEKDEVKGATRPQVNLTPGSGKLAVAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Potri.009G054200 [exp]	0	1
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Potri.009G043200 [exp]	2.00	0.9672
AT2G48070		RPH1	resistance to phytophthora 1 (...		Potri.014G137300 [exp]	7.34	0.9670
AT1G49380			cytochrome c biogenesis protei...		Potri.009G111692 [exp]	10.00	0.9588
AT5G59750			DHBP synthase RibB-like alpha/...		Potri.001G234900 [exp]	11.48	0.9538
AT1G02150			Tetratricopeptide repeat (TPR)...		Potri.014G050300 [exp]	12.96	0.9622
AT2G22360			DNAJ heat shock family protein...		Potri.005G073900 [exp]	12.96	0.9647
					Potri.011G080900 [exp]	13.85	0.9585
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Potri.015G069100 [exp]	14.42	0.9576
AT5G02830			Tetratricopeptide repeat (TPR)...		Potri.006G132700 [exp]	17.97	0.9521
AT1G75730			unknown protein		Potri.005G238800 [exp]	19.44	0.9501

Compare expression of checked genes

Potri.009G054200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.