Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19350 555 / 0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G19130 372 / 1e-126 ATRBP47B RNA-binding protein 47B (.1) AT1G49600 360 / 9e-122 ATRBP47A RNA-binding protein 47A (.1) AT1G47500 359 / 3e-121 ATRBP47C' RNA-binding protein 47C' (.1) AT1G47490 356 / 3e-120 ATRBP47C RNA-binding protein 47C (.1.2) AT5G54900 350 / 2e-118 ATRBP45A RNA-binding protein 45A (.1) AT1G11650 346 / 2e-116 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G27000 342 / 4e-115 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17370 151 / 3e-41 UBP1B oligouridylate binding protein 1B (.1.2) AT1G54080 142 / 5e-38 UBP1A oligouridylate-binding protein 1A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G143400 [exp] 387 / 2e-132 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.009G105300 [exp] 387 / 3e-132 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.014G034600 [exp] 380 / 8e-130 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 376 / 4e-128 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.004G017200 [exp] 374 / 1e-127 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G423400 [exp] 365 / 1e-123 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G138400 [exp] 362 / 7e-123 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G139300 [exp] 147 / 4e-40 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.006G279600 [exp] 145 / 3e-39 AT1G17370 469 / 9e-165 oligouridylate binding protein 1B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031277 [exp] 660 / 0 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031844 [exp] 659 / 0 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012070 [exp] 378 / 3e-129 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10018345 [exp] 373 / 2e-127 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021754 [exp] 367 / 2e-124 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10014029 [exp] 361 / 1e-123 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10012071 [exp] 357 / 3e-122 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10019889 [exp] 354 / 7e-121 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1) Lus10027373 [exp] 348 / 7e-119 AT5G19350 293 / 2e-97 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10027911 [exp] 332 / 3e-112 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.009G054400.1 pacid=42771435 polypeptide=Potri.009G054400.1.p locus=Potri.009G054400 ID=Potri.009G054400.1.v4.1 annot-version=v4.1 ATGGCAGCACCAACAGCACCAGGAGGCTACCATCAACCAGCAACTTTAGAAGAAGTAAGAACCCTTTGGATTGGTGATTTGCAGTATTGGGCCGATGAAT CCTACCTCACCTCCTGCTTCGCTCACACTGGCGAGGTAGTCTCGATTAAAATAATACGCAACAAGTTAACTGGACAGCCTGAGGGTTATGGGTTTGTGGA GTTTGTTTCTCACGCAGCAGCTGAAAGGATTCTGCAGACGTATAATGGGACGCAAATGCCAGGAACGGAACAAACCTTTAGGTTGAACTGGGCTTCTTTC GGGATTGGGGAAAGGCGGCCCGATGCAGGGCCGGAACATTCGATTTTTGTTGGGGATTTAGCACCTGATGTTACGGATTATCTATTACAGGAGACGTTTC GGGTTCATTATCCGTCGGTTAGAGGTGCGAAGGTTGTGACTGATCCGAATACTGGACGGTCCAAGGGATATGGGTTTGTTAAATTTGCGGATGAGAATGA GAGAAATCGTGCCATGACTGAGATGAATGGTGTTTTTTGCTCAACTAGGCCAATGCGAATTAGCATGGCAACACCCAAGAAGACCACCAGTTTTCAACAA CAATATGCTGTGCCGAAAGCCTTTTATCCAGCTCCCGCATACACTGCACCAGTCCAAGTGGTTTCAGCAGATGGTGACATTACTAATACCACAATCTTTG TTGGTAACTTGGATCCTAATGCCACAGAAGAGGACCTCAGGCAAACCTTTCTGCAGCTTGGGGAGATTGCCTCTGTCAAGATTCCTGCAGGCAGAGGATG TGGTTTCGTACAGTTTGCAACTAGGACATCAGCTGAAGAAGCAATACAAAGGATGCAAGGGCATGTGATTGGTCAACAACCAGTACGCATTTCTTGGGGA AAGAAACAAGACTTAACAGCTACCTGGGGTCAGCAAGTAGATCAATGGAATGCTTATTATGGTTATGGACAAGGCTATGATGCATATGCTTATGGGGGTA CACATGATCCCTCATTATATGCATACAATGCATACGCTGGTTATCCACAGTACCCTCAACAGGTTGAAGGTGCTCCAGACATGGCAGGTGTTGTCCCAGT TGCTGAACATAGGGAAGAGTCTTATGATCCGTTGGCTGCTCCAGATGTTGATAAGTTAAATGCTGCTTATCTTTCTACACATGGAAGTGCCATCTTTGGC CGGACTTTGTGGATGAAAACCTCATCACTTACGCAACAAGCTCAGGCATAA
AA sequence Show only first row Show all	>Potri.009G054400.1 pacid=42771435 polypeptide=Potri.009G054400.1.p locus=Potri.009G054400 ID=Potri.009G054400.1.v4.1 annot-version=v4.1 MAAPTAPGGYHQPATLEEVRTLWIGDLQYWADESYLTSCFAHTGEVVSIKIIRNKLTGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASF GIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRVHYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMTEMNGVFCSTRPMRISMATPKKTTSFQQ QYAVPKAFYPAPAYTAPVQVVSADGDITNTTIFVGNLDPNATEEDLRQTFLQLGEIASVKIPAGRGCGFVQFATRTSAEEAIQRMQGHVIGQQPVRISWG KKQDLTATWGQQVDQWNAYYGYGQGYDAYAYGGTHDPSLYAYNAYAGYPQYPQQVEGAPDMAGVVPVAEHREESYDPLAAPDVDKLNAAYLSTHGSAIFG RTLWMKTSSLTQQAQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Potri.009G054400 [exp]	0	1
AT2G47920			Kinase interacting (KIP1-like)...		Potri.002G207700 [exp]	6.63	0.7926
AT3G52860			unknown protein		Potri.014G127900 [exp]	11.22	0.7485
AT5G59970			Histone superfamily protein (....		Potri.007G013500 [exp]	16.12	0.7862	HFO909
AT3G55820			Fasciclin-like arabinogalactan...		Potri.010G192300 [exp]	16.88	0.6892
AT5G42655			Disease resistance-responsive ...		Potri.002G131500 [exp]	17.94	0.7567
AT3G48970			Heavy metal transport/detoxifi...		Potri.015G144300 [exp]	19.89	0.7693
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Potri.004G090500 [exp]	20.27	0.7895
AT1G77750			Ribosomal protein S13/S18 fami...		Potri.002G088400 [exp]	20.49	0.7867
AT5G52370			unknown protein		Potri.009G040100 [exp]	21.49	0.7676
AT3G22990		LFR	LEAF AND FLOWER RELATED, ARM r...		Potri.008G159900 [exp]	23.36	0.6906

Compare expression of checked genes

Potri.009G054400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.