Plant FIBer expression Database

Potri.009G054600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G34890 2077 / 0 ATXDH1 xanthine dehydrogenase 1 (.1)
AT4G34900 2002 / 0 ATXDH2 A. THALIANA XANTHINE DEHYDROGENASE 2, xanthine dehydrogenase 2 (.1)
AT3G43600 512 / 2e-158 AtAO3, atAO-2, AOgamma, AO3, AAO2 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
AT5G20960 488 / 2e-149 AT-AO1, AOalpha, ATAO1, ATAO, AAO1 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2)
AT2G27150 466 / 2e-141 AtAAO3, At-AO3, AOdelta, AAO3 Arabidopsis thaliana aldehyde oxidase 3, Aldehyde oxidase delta, abscisic aldehyde oxidase 3 (.1.2)
AT1G04580 457 / 5e-138 ATAO-4, ATAO2, AAO4 ALDEHYDE OXIDASE 2, arabdopsis thaliana aldehyde oxidase 4, aldehyde oxidase 4 (.1)
AT4G37500 116 / 3e-30 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein (.1)
AT3G04390 81 / 2e-18 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein (.1)
AT4G31196 54 / 6e-09 oxidoreductases (.1)
AT1G02590 46 / 5e-06 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G153600
[exp]
493 / 6e-151 AT3G43600 1741 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
Potri.004G191300
[exp]
421 / 1e-124 AT2G27150 1678 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Aldehyde oxidase delta, abscisic aldehyde oxidase 3 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034306
[exp]
2196 / 0 AT4G34890 2127 / 0.0 xanthine dehydrogenase 1 (.1)
Lus10040474
[exp]
479 / 4e-146 AT3G43600 1555 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
Lus10008429
[exp]
479 / 6e-146 AT3G43600 1652 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
Lus10013393
[exp]
473 / 7e-144 AT3G43600 1657 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
Lus10019386
[exp]
393 / 8e-115 AT3G43600 1635 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
Lus10011279
[exp]
394 / 1e-114 AT5G20960 1315 / 0.0 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2)
Lus10041463
[exp]
138 / 1e-37 AT4G34890 122 / 4e-33 xanthine dehydrogenase 1 (.1)
Lus10023586
[exp]
81 / 4e-17 AT3G43600 209 / 5e-63 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0486 Fer2 PF00111 Fer2 2Fe-2S iron-sulfur cluster binding domain
CL0077 FAD_PCMH PF00941 FAD_binding_5 FAD binding domain in molybdopterin dehydrogenase
CL0077 PF01315 Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CL0486 Fer2 PF01799 Fer2_2 [2Fe-2S] binding domain
CL0486 PF02738 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase
CL0233 SufE_NifU PF03450 CO_deh_flav_C CO dehydrogenase flavoprotein C-terminal domain
Representative CDS sequence
>Potri.009G054600.1 pacid=42771085 polypeptide=Potri.009G054600.1.p locus=Potri.009G054600 ID=Potri.009G054600.1.v4.1 annot-version=v4.1
ATGGGTTCTTTGAAAAACGAAGGAGAAATGGAACCGATTGGAGGGGAATCATCAAAGGATGCGATTTTGTATGTTAATGGAGTTAGACGAGTGTTGTCCG
ATGGATTGGCCCACTTGACTCTTCTTGAATATCTTAGAGACATTGGCTTGACAGGGACAAAGCTAGGCTGTGGTGAAGGTGGTTGTGGGGCCTGCACTGT
CATGGTTTCTCATTATAATAAAGTGCTGAAGAAATGTGTGCATTATGCAGTCAATGCGTGCTTGGCTCCTTTGTATTCTATAGAAGGGATGCATATAATA
ACTGTGGAGGGAGTTGGGAACAGAAAAATTGGCTTGCACCCAATTCAAGAATCTTTAGCTCGCTCGCATGGCTCACAATGTGGATTTTGTACTCCTGGAT
TTATTATGTCAATGTATGCACTGCTGAGGTCAAGTGAAGTACCACCAACTGAAGAGCAAATTGAAGAATGCCTTGCTGGAAATTTGTGTCGTTGCACTGG
TTACAGACCAATTATTGATGCATTTCAAGTTTTTGCCAAAACTGATGATGCATTTTACACCAATACATCTTCATCAAGTCTTCAGAGTGGTGAATTTTTG
TGCCCTTCAACTGGTAAACCCTGTTCGTGCAAATCAAAAAGTTTAAATGGTGAAGGAACATGCAAACGAAGTACTGCCAATGGAAATAAGTATGAGCCTG
TCTCTTATAGTGAGGTAGATGGGAGCACATATACAGACAAAGAACTTATTTTTCCTCCTGAGTTGTTGCTGAGGAAATTAACTCCCTTAAATTTGAATGG
ATTTGGTGGGCTTAAGTGGTTTCGGCCATTAAAAATTCAGCATTTGCTGGAGTTAAAAGCGAAATACCCAGATGCAAAGTTGGTGATGGGTAATACTGAG
GTTGGAATAGAGATGAGGTTGAAGAGAATCCAGTATAAGGTTTTGATATCTGTTGCTCACGTACCAGAACTCAACGTCTTGAATGTCAAGGATGATGGTT
TAGAGATAGGTGCTGCAGTAAGACTCATGGAACTCCTGCAAATGTTTAGAAAGGTCGTAAATGAGCGTGCTGCCCATGAGACATCATCATGTAAGGCCTT
TATTGAACAAATAAAATGGTTTGCTGGGACACAAATAAAAAATGTCGCAAGTGTTGGAGGGAACATTTGTACAGCCAGTCCAATATCAGATTTGAACCCT
CTCTGGATGGCTGCAGGAGCAAAATTTCAAATCATTGATTGCAAAGGAAACATTAGAACAATCATGGCTGAGAATTTCTTTCTGGGTTATCGAAAGGTGG
ATCTTGCAAGTGGTGAAATTTTACTGTCAATATTCTTACCATGGACTAGGCCTCTTGAGCATGTAAAAGAATTTAAGCAGGCTCACCGAAGGGATGATGA
TATTGCAATTGTGAATGCTGGAATGCGTGTCTTTCTTGAAGAAAAAGGTGAAGATTTAGTCGTTTCAGATGCATTGATTGTTTATGGTGGGGTAGCTCCC
TTATCTTTGTCTGCAGTAAAAACCAAAGAATTCATCATTGGGAAGAAATGGGATCAGGAGCTCTTGCAGGGTGCTTTGAAATTCTTAGAAATAGACATTT
TTCTCAAGGAAGATGCTCCTGGTGGAATGGTGGAATTCAGAAAATCTTTAACTCTTAGCTTCTTCTTCAAATTTTTCCTGTGGGTTTCACAACAAATTAG
CGTGAAAAAATCCACTGGGATACCATTATCTTATCTGTCGGCTGCACAACCATTCCAGCGGCCATCAATCATGGGAAGTCAGGACTATGAAATTAGAAAA
CATGGTACATCTGTGGGTTCTCCTGAGATTCATCTCTCGTCAAGACTTCAGGTCACAGGAGAGGCAGAATATGCTGACGACGCACCAATGCCTTCCAATG
GTCTGCATGCTGCATTAGTATTAAGCAGAAAACCTCATGCAAAGATTCTTTCTATAGATGATTCAGAAGCCAAGTCTTTACCTGGCGTTGCGGGAATATT
TTTAGCCAAAGATGTGCCTGGTGATAATCACATTGGAGCAATAATTCATGATGAGGAGCTCTTTGCTACAAAGTATGTGACTTGTGTAGGACAGGTTATA
GGAGTAGTTGTTGCTGATACACACGAAAATGCAAAACTAGCTGCAGCAAAAGTTGTTGTTGAATATGAAGAACTCCCAGCAATATTGTCAATACAGGAAG
CAGTTGATGCTAAAAGTTTTCATCCCAACTCAGAGAAGTGTTTGAAAAAGGGTGACGTGGATGTTTGTTTTCAATCAGGTCAATGTGACAAGATCATCCA
TGGGGAAGTTCATGTGGGCGGGCAGGAACATTTTTACTTGGAAACACAGAGCAGTTTGGTTTGGACTATGGATTGTGGCAATGAAGTTCATATGATTTCC
TCTACTCAAGCCCCTCAGAAGCACCAGAAGTATGTGGCTCAGGTCCTTGGTCTTCCAATGTCAAAAGTAGTTTGTAAAACCAAACGAATTGGTGGTGGAT
TTGGTGGAAAGGAGACAAGATCAGCTTTCATTGCTGCTGCCGCTTCTGTCCCATCATATCTATTGAATCGGCCAGTGAAAATCACATTAGACAGAGATGT
AGACATGATGATAACTGGACAGCGCCACGCTTTTCTTGGAAAGTATAAGGTTGGCTTTACAAAGGAAGGAAGATTGCTTGCTCTGGATCTAGAAATCTAC
AATAATGCTGGAAATTCATTAGACCTGTCTCTTTCTGTCCTTGAACGTGCAATGTTCCATTCTGACAATGTGTATGAGATACCAAATATCAGGGTACTAG
GAAGGGTTTGCTTCACTAATTTTCCCAGTCACACTGCTTTCCGAGGATTTGGAGGTCCTCAAGGTATGCTTATAGCTGAGAATTGGATTCAAAAGATTGC
CGTGGAGCTTAACAAAAGCCCAGAAGAGATAAGAGAAATTAACTTTCAAGGTGAAGGATCAATATTACATTACAGCCAACAACTTCAACACTGTACACTC
GGTCAGCTCTGGAATGAATTGAAGTTATCTTCTGACCTTTTGAGGGCTCTTGAAGATGTTAAGCAATTTAATCTTCAGAATCGGTGGAAAAAACGTGGTG
TTGCGATGGTTCCTACAAAATTCGGCATTTCGTTTACAACAAAGTTCATGAACCAGGCAGGTGCTCTTGTTCATGTCTACACAGATGGAACTGTTTTAGT
TACACATGGAGGTGTTGAGATGGGCCAAGGTTTACATACAAAAGTTGCTCAAGTTGCTGCTTCTGCTTTCAATATTCCATTAAGTTCTGTGTTTATATCA
GAGACAAGTACTGACAAGGTACCTAATACATCACCAACAGCAGCTTCTGCAAGCTCTGATTTGTATGGAGCAGCAGTTTTGGATGCATGCGAGCAAATAA
AGGCACGAATGGAGCCTGTTGCTTTAAAACATAATTTCAGCTCGTTTGCTGAGCTGGCTGGAGCCTGCTACATGCAGCAAATAGACCTTTCAGCTCATGG
ATTCTACATTACACCTGACATTGGCTTTGACTGGACAACTGGTAAAGGAAACCCATTTAATTACTTCACCTACGGGGCTGCATTTGCTGAGGTTGAAATT
GACACGTTGACGGGAGATTTCCACACAAGGACAGCAAACATTATACTGGATCTTGGTTACTCTATCAATCCAGCCATTGACGTTGGACAGATTGAAGGAG
CATTTGTACAAGGTTTGGGATGGGTGGCCATAGAAGAACTTAAGTGGGGAGATGCAGCACATAAGTGGATCCCCCCTGGCTGTTTGTATACAAGTGGGCC
TGGAAGTTATAAGATTCCTTCCATGAATGATGTCCCGTTCAAATTCAGCGTTTCACTTCTCAAGGGTCATCCAAATGTAAAGGCTATCCACTCATCTAAA
GCTGTTGGTGAGCCTCCATTTTTCCTGGCTTCAGCTGTCTTTTTTGCCATCAAAGATGCTATTATAGCTGCAAGAGCAGAAGTTGGGCATCATGAGTGGT
TTCCTCTTGATAATCCAGCAACACCTGAACGTATCCGGATGGCTTGCTTGGATGAATTTAGCACTCGATTCATAGACTCCGACTTCCGTCCCAAGCTTAG
TGTCTGA
AA sequence
>Potri.009G054600.1 pacid=42771085 polypeptide=Potri.009G054600.1.p locus=Potri.009G054600 ID=Potri.009G054600.1.v4.1 annot-version=v4.1
MGSLKNEGEMEPIGGESSKDAILYVNGVRRVLSDGLAHLTLLEYLRDIGLTGTKLGCGEGGCGACTVMVSHYNKVLKKCVHYAVNACLAPLYSIEGMHII
TVEGVGNRKIGLHPIQESLARSHGSQCGFCTPGFIMSMYALLRSSEVPPTEEQIEECLAGNLCRCTGYRPIIDAFQVFAKTDDAFYTNTSSSSLQSGEFL
CPSTGKPCSCKSKSLNGEGTCKRSTANGNKYEPVSYSEVDGSTYTDKELIFPPELLLRKLTPLNLNGFGGLKWFRPLKIQHLLELKAKYPDAKLVMGNTE
VGIEMRLKRIQYKVLISVAHVPELNVLNVKDDGLEIGAAVRLMELLQMFRKVVNERAAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASPISDLNP
LWMAAGAKFQIIDCKGNIRTIMAENFFLGYRKVDLASGEILLSIFLPWTRPLEHVKEFKQAHRRDDDIAIVNAGMRVFLEEKGEDLVVSDALIVYGGVAP
LSLSAVKTKEFIIGKKWDQELLQGALKFLEIDIFLKEDAPGGMVEFRKSLTLSFFFKFFLWVSQQISVKKSTGIPLSYLSAAQPFQRPSIMGSQDYEIRK
HGTSVGSPEIHLSSRLQVTGEAEYADDAPMPSNGLHAALVLSRKPHAKILSIDDSEAKSLPGVAGIFLAKDVPGDNHIGAIIHDEELFATKYVTCVGQVI
GVVVADTHENAKLAAAKVVVEYEELPAILSIQEAVDAKSFHPNSEKCLKKGDVDVCFQSGQCDKIIHGEVHVGGQEHFYLETQSSLVWTMDCGNEVHMIS
STQAPQKHQKYVAQVLGLPMSKVVCKTKRIGGGFGGKETRSAFIAAAASVPSYLLNRPVKITLDRDVDMMITGQRHAFLGKYKVGFTKEGRLLALDLEIY
NNAGNSLDLSLSVLERAMFHSDNVYEIPNIRVLGRVCFTNFPSHTAFRGFGGPQGMLIAENWIQKIAVELNKSPEEIREINFQGEGSILHYSQQLQHCTL
GQLWNELKLSSDLLRALEDVKQFNLQNRWKKRGVAMVPTKFGISFTTKFMNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFIS
ETSTDKVPNTSPTAASASSDLYGAAVLDACEQIKARMEPVALKHNFSSFAELAGACYMQQIDLSAHGFYITPDIGFDWTTGKGNPFNYFTYGAAFAEVEI
DTLTGDFHTRTANIILDLGYSINPAIDVGQIEGAFVQGLGWVAIEELKWGDAAHKWIPPGCLYTSGPGSYKIPSMNDVPFKFSVSLLKGHPNVKAIHSSK
AVGEPPFFLASAVFFAIKDAIIAARAEVGHHEWFPLDNPATPERIRMACLDEFSTRFIDSDFRPKLSV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G34890 ATXDH1 xanthine dehydrogenase 1 (.1) Potri.009G054600
[exp]
0 1
AT2G43500 NLP8 Plant regulator RWP-RK family ... Potri.007G133400
[exp]
1.41 0.9226
AT3G55270 MKP1, ATMKP1 ARABIDOPSIS MITOGEN-ACTIVATED ... Potri.010G210900
[exp]
3.16 0.9036
AT1G68940 Armadillo/beta-catenin-like re... Potri.003G201000
[exp]
4.89 0.9067
AT1G10940 ASK1, SNRK2-4, ... SNF1-related protein kinase 2.... Potri.004G138300
[exp]
7.74 0.8952 SPK.2
AT4G25450 ABCB28, ATNAP8 ARABIDOPSIS THALIANA NON-INTRI... Potri.015G136700
[exp]
7.74 0.9178 Pt-NAP8.1
AT5G61380 AtTOC1, TOC1, A... PSEUDO-RESPONSE REGULATOR 1, T... Potri.015G061900
[exp]
8.48 0.8851
AT2G47390 Prolyl oligopeptidase family p... Potri.014G120600
[exp]
9.38 0.8956
AT5G20280 SPSA1, ATSPS1F sucrose-phosphate synthase A1,... Potri.018G124677
[exp]
9.48 0.8989
AT2G47350 HIT zinc finger ;PAPA-1-like c... Potri.013G008300
[exp]
10.39 0.8772
AT4G32940 GAMMAVPE, GAMMA... gamma vacuolar processing enzy... Potri.006G232900
[exp]
14.89 0.8681 Pt-GAMMA-VPE.2

Potri.009G054600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.