Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28490 523 / 0 RmlC-like cupins superfamily protein (.1) AT2G18540 199 / 3e-56 RmlC-like cupins superfamily protein (.1) AT4G36700 144 / 1e-37 RmlC-like cupins superfamily protein (.1) AT3G22640 86 / 7e-18 PAP85 cupin family protein (.1) AT1G07750 72 / 2e-13 RmlC-like cupins superfamily protein (.1) AT2G28680 68 / 3e-12 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029100 [exp] 201 / 4e-57 AT2G18540 391 / 2e-126 RmlC-like cupins superfamily protein (.1) Potri.006G002500 [exp] 112 / 1e-26 AT3G22640 174 / 7e-49 cupin family protein (.1) Potri.005G212266 [exp] 77 / 2e-15 AT3G22640 128 / 2e-33 cupin family protein (.1) Potri.007G047200 [exp] 73 / 9e-14 AT2G28680 561 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.008G102900 [exp] 69 / 2e-12 AT2G28680 543 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.019G004500 [exp] 61 / 1e-09 AT5G44120 386 / 3e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004400 [exp] 60 / 2e-09 AT5G44120 388 / 5e-131 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004200 [exp] 56 / 4e-08 AT5G44120 383 / 6e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004300 [exp] 55 / 8e-08 AT5G44120 385 / 7e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011364 [exp] 526 / 0 AT2G28490 466 / 2e-161 RmlC-like cupins superfamily protein (.1) Lus10006420 [exp] 518 / 0 AT2G28490 471 / 2e-163 RmlC-like cupins superfamily protein (.1) Lus10041722 [exp] 213 / 3e-61 AT2G18540 401 / 2e-132 RmlC-like cupins superfamily protein (.1) Lus10037937 [exp] 207 / 5e-59 AT2G18540 400 / 2e-131 RmlC-like cupins superfamily protein (.1) Lus10042615 [exp] 113 / 1e-26 AT3G22640 201 / 3e-58 cupin family protein (.1) Lus10042617 [exp] 105 / 6e-24 AT3G22640 202 / 2e-58 cupin family protein (.1) Lus10040867 [exp] 93 / 2e-20 AT2G28680 517 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10005880 [exp] 82 / 6e-17 AT2G28680 518 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10022070 [exp] 83 / 1e-16 AT3G22640 205 / 8e-60 cupin family protein (.1) Lus10015219 [exp] 82 / 1e-16 AT1G07750 568 / 0.0 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00190 [poplar] [flax] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Potri.009G054700.2 pacid=42772449 polypeptide=Potri.009G054700.2.p locus=Potri.009G054700 ID=Potri.009G054700.2.v4.1 annot-version=v4.1 ATGGGAAATGGAGCTGCCCATCTGCTCTTGCTGCTTGTGCTCTGTTATGGGGTCCAAATGGCAGTGGGGTTATATAGAGGGGAAAAGGAAGACTGGAGAG GAGACAGGGATGAGACACAGATAGATAGGGAAGAAGAGTGGTTGTTGTTGCAAGATTCAAAGCGTGTGGTGAAAACTGATGCTGGGGAAATGATGGTGCT CAGGAATTATGGTGGAAGGATTATAGATAGGCCTATGCATATCGGGTTCATTACGATGGAGCCCCGAACTCTTTTTGTTCCTCAGTATATCGACTCCAGC TTGATCCTCTTCATTCGAACAGGGGAAGCCAAGGTTGGATTGATCTACAAAGATGAGTTAGCAGAAAGACGATTAAAGATCGGGGATATCTATCGAATTC CTGCTGGCTCAGCATTCTACTTGATGAACGCAGAGGAGGGGCAGAGACTTCACATCATTTGCAGCATCGACCCATCTGAGAGTTTGGGATTGGGTTTTTT CCAGTCCTTCTACATTGGTGGGGGAACCTATCCACCATCCATTCTTGCTGGTTTTGAGCTAGAAACCCTTTCAGCTGCCTTCAATGTGACAGCAGATGAA GTAAGGGAAATCATGACCAGGCAACAAGAGGGTCCGATAGTTTTCATAGGTGATTCTAGGGCACCAAGGCCAAGCTTATGGACAAAATTCCTTCAACTGA AGGAGCAAGATAGACTACAACACCTAAAAAGAATGGTGAAATTCCAACAACAACCCAGTCAAGGAGAGGAGCAAAGGACATGGTCATGGAGGAAACTCTT GAATTCAATATTTGGACAGGAAAATAAGAAAAAAGGTGAAAAAGTTGGCAAATCCCCTGATTCATACAATATCTATGATAGACGGCCTGACTTTAGAAAC AACTATGGATGGAGCATTGCCCTTGATGAGTCTGATTATCAGCCTTTGAAATACTCTGGTATCGGTGTCTATCTGGTCAACCTTACTGCGGGATCAATGT TGGCACCTCATGTGAACCCAACAGCAACAGAGTACGGAATTGTTTTGAGAGGGAGCGGCAGAATACAGATTGTGTTTCCAAATGGAACACAAGCGATGGA TGCTACAGTAAAAGAAGGCGATGTTTTCTGGGTTCCAAGATACTTCCCCTTCTGTCAAATTGCAGCTCGGTCAGGTCCTTTCGAGTTCTTTGGATTCACA ACTTCAGCTCGCGAGAACAGGCCACAGTTCCTGGTTGGGGCAAACTCAATTCTTCAAACCTTGAGAAGCCCTGAGCTTGCGGCTGCTTTTGGTGTGAGTG AGGATAGGATTAATCGTGTCATCAAGGCACAGCGCGAGGCTGTTATATTGCCTTCAGCAAGTGCAGCGCCACCAGATGAGGAGGAGGGGGTGGCCAAGTT CGAGAGGGTGCAGAAGGTGATCAAGAGCTTTGTCAACCAAGTGATTATGGGTTTCGATTAG
AA sequence Show only first row Show all	>Potri.009G054700.2 pacid=42772449 polypeptide=Potri.009G054700.2.p locus=Potri.009G054700 ID=Potri.009G054700.2.v4.1 annot-version=v4.1 MGNGAAHLLLLLVLCYGVQMAVGLYRGEKEDWRGDRDETQIDREEEWLLLQDSKRVVKTDAGEMMVLRNYGGRIIDRPMHIGFITMEPRTLFVPQYIDSS LILFIRTGEAKVGLIYKDELAERRLKIGDIYRIPAGSAFYLMNAEEGQRLHIICSIDPSESLGLGFFQSFYIGGGTYPPSILAGFELETLSAAFNVTADE VREIMTRQQEGPIVFIGDSRAPRPSLWTKFLQLKEQDRLQHLKRMVKFQQQPSQGEEQRTWSWRKLLNSIFGQENKKKGEKVGKSPDSYNIYDRRPDFRN NYGWSIALDESDYQPLKYSGIGVYLVNLTAGSMLAPHVNPTATEYGIVLRGSGRIQIVFPNGTQAMDATVKEGDVFWVPRYFPFCQIAARSGPFEFFGFT TSARENRPQFLVGANSILQTLRSPELAAAFGVSEDRINRVIKAQREAVILPSASAAPPDEEEGVAKFERVQKVIKSFVNQVIMGFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28490			RmlC-like cupins superfamily p...		Potri.009G054700 [exp]	0	1
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Potri.012G101100 [exp]	1.00	0.9579
AT1G17285			unknown protein		Potri.001G162300 [exp]	6.70	0.9261
AT1G01380	MYB	ETC1	ENHANCER OF TRY AND CPC 1, Hom...		Potri.011G026300 [exp]	8.24	0.9065
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025100 [exp]	8.77	0.9297
AT5G13980			Glycosyl hydrolase family 38 p...		Potri.012G106500 [exp]	10.24	0.9052
AT5G41960			unknown protein		Potri.001G084600 [exp]	11.13	0.9082
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.007G141700 [exp]	11.48	0.9290	Pt-ZOG1.2
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Potri.005G167300 [exp]	14.49	0.9376
AT1G50520		CYP705A27	"cytochrome P450, family 705, ...		Potri.009G065100 [exp]	18.30	0.9367
AT1G57790			F-box family protein (.1)		Potri.012G106750 [exp]	18.81	0.9345

Compare expression of checked genes

Potri.009G054700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.