Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13800 610 / 0 CRN1, PPH Co-regulated with NYE1, pheophytinase (.1.2) AT4G36530 127 / 2e-32 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 107 / 2e-25 alpha/beta-Hydrolases superfamily protein (.1) AT4G25290 94 / 5e-20 DNA photolyases;DNA photolyases (.1) AT5G38520 88 / 1e-18 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G12830 49 / 9e-06 alpha/beta-Hydrolases superfamily protein (.1) AT5G17780 47 / 3e-05 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G68890 47 / 5e-05 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G121000 [exp] 132 / 8e-34 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G219700 [exp] 96 / 4e-21 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G129500 [exp] 93 / 1e-19 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1) Potri.019G063900 [exp] 83 / 5e-17 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019755 [exp] 600 / 0 AT5G13800 589 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10005320 [exp] 564 / 0 AT5G13800 551 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Lus10016369 [exp] 495 / 4e-172 AT5G13800 483 / 2e-168 Co-regulated with NYE1, pheophytinase (.1.2) Lus10028315 [exp] 134 / 1e-34 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10041763 [exp] 118 / 9e-29 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10025172 [exp] 115 / 2e-26 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10031137 [exp] 96 / 2e-20 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10003969 [exp] 74 / 6e-14 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031716 [exp] 73 / 4e-13 AT4G25290 700 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10016051 [exp] 48 / 2e-05 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.009G054800.3 pacid=42771163 polypeptide=Potri.009G054800.3.p locus=Potri.009G054800 ID=Potri.009G054800.3.v4.1 annot-version=v4.1 ATGATGATTTTAGCTTTTTTTCTTATTTTTATGGAGTTCTATTTTCAACTACGCAGAAGGTATGCTTCGTATTTGCTTATCAATATGATTTTACTGATCA CTGCAGATCAACCTTTCTGGGGCATGGAGATTCTTACTTCCAGTACCGCATCTTGTTGTCTTGTTGTAAATTTGAGGTGGAAACTAGCTGAAAATGGATC AAATTCTTCCCAGTTAAAGCTCCCTACTAGTAGAGAACGCAAAATTCTGTTTGCTAGGACTAATCAAAGAAATGGGTCACTAAGATTTTCTAGTGTTGAT AAGTTCTTGAAAAAACTCAATCATGGGAAAGGTTCTAGGTCACTTGACTCATTTGGAGGGTTAAAGAATGGTAATTCAAAGGTTTTCAGTGGAAATTCTA GTAGTTATGTGGTTGGTGGAGAGGATGACGTGGGGAGTATTACAGAAAATGGAGAATCTCCGACTAAGGTTTTGATTCCGGGATTGCCAGATGAATCCAA TGGTGAATATAGTGCCCCCGTAAGCAGTTGTTTTTGGAAATGGAAGCCTAAACTTAATGTGCATTATGAGAAAGCTGGTTGTGAAAATGTGAATTCTCCA CCAGTGTTGTTTCTTCCTGGATTTGGTGTTGGCTCCTTTCATTATGAGAAGCAATTGAAGGATTTGGGTCGTGACTACAGAGTATGGGCGATTGATTTTC TTGGGCAGGGAATGTCATTGCCAGTTGAGAATCCCACTCTGTTCTCAAAGGATGGGGCTGCCTCAGAAGGGAAGGATTCCATTTGGGGGTTTGGAGATGA GATTGAACCGTGGGCGAATGACCTTGTTTTCTCTATGGATTTATGGCAGGACCAAGTTCACAATTTCATAGAAGAGGTAATTGGCGAACCAGTATATATT GTAGGGAACTCGCTGGGAGGATTTGTTGCATTGTACTTTGCAGCAAGATACCCTCATTTAGTGAAAGGTGTTACATTGCTAAATGCAACTCCGTTTTGGG GGTTTCTGCCTAATCCAATAAGATCTCCAAGATTAGCAAGGATATTTCCATGGTCTGGGACATTTCCTCTACCTGCAAATGTTAGAAAGCTCATAGCATT CTTTTGGCAGAAAATAAGTGATCCTAAAAGTATTGCAGAGATACTTAAACAGGTTTACACAGATCATTCTACAAATATTGACAAAGTGTTTTCTCGTATT CTTGAGATTACACAACATCCTGCTGCTGCTGCATCATTTGCCTCAATAATGTTTGCTCCTCAGGGACAGCTATCCTTCAGGGAGACTTTAGCCAGGTGTA AAATGAGTGATACTCCCATTTGTCTCGTGTATGGAAAGGAGGACCCCTGGGTGAAGCCTGTCTGGGGCCTACAGGTGAAACAGCAGGTGCCAGAAGCTCC GTATTATGAGATCAGCCCAGCTGGTCACTGTCCCCATGATGAAGTTCCTGAGGCTGTGAATTACTTGCTTCGTGGGTGGATTAAAAACCTGGAATCCCAT GGTTCAGTTGCCCTACCATTACATGAGGATGCAGAAGTTGTCGAGAATAGCTTTGCCATGGACTTGGAATTTGTGAGAGAAGGATCAAGAAAATCAGTTA TTGTTAGGTTCTTTGGATCCAGGTTTTCTATTTGGAATAGCTTTAGCTCTTACATTAAATCTCAATTCAAGGAAACTACTAGCCGAATCCTGACACCATA G
AA sequence Show only first row Show all	>Potri.009G054800.3 pacid=42771163 polypeptide=Potri.009G054800.3.p locus=Potri.009G054800 ID=Potri.009G054800.3.v4.1 annot-version=v4.1 MMILAFFLIFMEFYFQLRRRYASYLLINMILLITADQPFWGMEILTSSTASCCLVVNLRWKLAENGSNSSQLKLPTSRERKILFARTNQRNGSLRFSSVD KFLKKLNHGKGSRSLDSFGGLKNGNSKVFSGNSSSYVVGGEDDVGSITENGESPTKVLIPGLPDESNGEYSAPVSSCFWKWKPKLNVHYEKAGCENVNSP PVLFLPGFGVGSFHYEKQLKDLGRDYRVWAIDFLGQGMSLPVENPTLFSKDGAASEGKDSIWGFGDEIEPWANDLVFSMDLWQDQVHNFIEEVIGEPVYI VGNSLGGFVALYFAARYPHLVKGVTLLNATPFWGFLPNPIRSPRLARIFPWSGTFPLPANVRKLIAFFWQKISDPKSIAEILKQVYTDHSTNIDKVFSRI LEITQHPAAAASFASIMFAPQGQLSFRETLARCKMSDTPICLVYGKEDPWVKPVWGLQVKQQVPEAPYYEISPAGHCPHDEVPEAVNYLLRGWIKNLESH GSVALPLHEDAEVVENSFAMDLEFVREGSRKSVIVRFFGSRFSIWNSFSSYIKSQFKETTSRILTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Potri.009G054800 [exp]	0	1
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Potri.010G107500 [exp]	1.00	0.9822
AT1G02305			Cysteine proteinases superfami...		Potri.002G184201 [exp]	1.41	0.9630
AT3G49200			O-acyltransferase (WSD1-like) ...		Potri.001G304600 [exp]	2.00	0.9444
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.003G119600 [exp]	3.46	0.9469
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G055900 [exp]	4.47	0.9436
AT2G29670			Tetratricopeptide repeat (TPR)...		Potri.010G191600 [exp]	5.29	0.9021
AT5G47860			Protein of unknown function (D...		Potri.003G158400 [exp]	8.36	0.9294
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Potri.004G217200 [exp]	9.94	0.9264
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G056200 [exp]	10.48	0.9275
AT1G06050			Protein of unknown function (D...		Potri.007G130400 [exp]	11.22	0.9319

Compare expression of checked genes

Potri.009G054800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.