Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51970 280 / 1e-92 ATASAT1, ASAT1, ATSAT1 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) AT5G55340 239 / 2e-76 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55360 238 / 7e-76 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55350 229 / 2e-72 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT1G34500 217 / 6e-68 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT1G34520 216 / 1e-67 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55380 215 / 4e-67 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55330 214 / 2e-66 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55370 211 / 2e-65 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT1G34490 206 / 1e-63 MBOAT (membrane bound O-acyl transferase) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055100 [exp] 404 / 9e-141 AT3G51970 330 / 8e-112 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.016G014600 [exp] 374 / 1e-128 AT3G51970 299 / 1e-99 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.009G055000 [exp] 370 / 1e-127 AT3G51970 314 / 7e-106 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.001G106800 [exp] 337 / 1e-114 AT3G51970 255 / 1e-82 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.001G260700 [exp] 335 / 9e-114 AT3G51970 268 / 2e-87 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.006G009800 [exp] 306 / 4e-102 AT3G51970 244 / 3e-78 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.016G014700 [exp] 293 / 7e-97 AT5G55340 242 / 1e-77 MBOAT (membrane bound O-acyl transferase) family protein (.1) Potri.008G145700 [exp] 285 / 4e-94 AT5G55340 264 / 1e-86 MBOAT (membrane bound O-acyl transferase) family protein (.1) Potri.006G009600 [exp] 114 / 3e-29 AT5G55360 145 / 3e-41 MBOAT (membrane bound O-acyl transferase) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039576 [exp] 327 / 1e-110 AT3G51970 329 / 7e-112 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Lus10022293 [exp] 196 / 1e-61 AT5G55340 178 / 2e-55 MBOAT (membrane bound O-acyl transferase) family protein (.1) Lus10003655 [exp] 127 / 2e-35 AT5G55380 126 / 5e-36 MBOAT (membrane bound O-acyl transferase) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0517 [poplar] [flax] MBOAT-like PF13813 [poplar] [flax] MBOAT_2 Membrane bound O-acyl transferase family
Representative CDS sequence Show only first row Show all	>Potri.009G054900.1 pacid=42772163 polypeptide=Potri.009G054900.1.p locus=Potri.009G054900 ID=Potri.009G054900.1.v4.1 annot-version=v4.1 ATGGAGGGTGAGATTCGCAACTTCCTGAAGGTATGGCTCTCAATCCTTTTTTGTTTATGTTGCTGCTATGCCATTGGTAAGGCAATACCAAAAGGAAAAA CAAGACTCCTATTCCTAATCCCATTTGTGTGCCTCTTTTTCTACCTTCCTCTTAATCTCTCCACCATATTTCTTGGAGGCAACACAGCGTTTTACATTGC TTGGCTTGGAAATTTCAAGCTCTTACTCTTTGCTTGCGGTAAGGGCCCTTTATCTTCACAATATTCATCAAGGTCTCTCTTAACTTTTGTTTCTGTTGCT TGTTTGCCCATCAAGATCCAAGAAAACCCACCTCCAAAATCACAAAACCAAGAAAACCAACCTCCTGTAATACCTACAGATCAAACCCACAAATCTTCGT TGAACTATGCAATAAAAGGTGTGCTTTGGGCATTTCTGGTAGTTATCCATGATTATAATGAATACATCCATCCAAAAATCATCTTGTGTCTTCTATGTCT CCATTTATACATCTTCCTCGACGTTGTCCTAGCCGTAGTTGCAGTCTTGGCTCGAACCATCCTAGGACTAGAGCTAGAGCCACAATTCAACGAGCCACAC CTCTCTACATCTCTACAAGACTTTTGGGGCAAACGATGGAACCTCATGGTCAGCAGTATCCTACGCCAGACCGTCTACGAACCCACCCGCAACATTAGCA CACGCGTCGTCGGTCGGAGGTGGTCCCCAATCCCCGCTGTTTTGGCCACGTTCTTGTCATCAGCCATTATGCACGAGGTCATGTTTTATTACCTGCTTCG CGCGAAACCGACATGGGAGGTCACATGGTTCTTTCTTCTACATGGATTTTGTGTAACAGTTGAAATTGTAATAAAGAAAGCGTTAAAGGGCAGGTGGCAA TTGCCGAGGCTGATCTCAGGGCTCTTCACCATAGGATTCGTCATGGTCACTAGCTGTTGGCTGTTCTTTCCTAAGCCGCTCCAGCGTAGGGCAGATGTCA GGGCGTTTGAAGAATATGCGGCACTAAGAGCTTTCGTGAGGGATTGCTCTCATGCTGTATTTGGACGCCCTTCCATCACCAGAAGCCATTAG
AA sequence Show only first row Show all	>Potri.009G054900.1 pacid=42772163 polypeptide=Potri.009G054900.1.p locus=Potri.009G054900 ID=Potri.009G054900.1.v4.1 annot-version=v4.1 MEGEIRNFLKVWLSILFCLCCCYAIGKAIPKGKTRLLFLIPFVCLFFYLPLNLSTIFLGGNTAFYIAWLGNFKLLLFACGKGPLSSQYSSRSLLTFVSVA CLPIKIQENPPPKSQNQENQPPVIPTDQTHKSSLNYAIKGVLWAFLVVIHDYNEYIHPKIILCLLCLHLYIFLDVVLAVVAVLARTILGLELEPQFNEPH LSTSLQDFWGKRWNLMVSSILRQTVYEPTRNISTRVVGRRWSPIPAVLATFLSSAIMHEVMFYYLLRAKPTWEVTWFFLLHGFCVTVEIVIKKALKGRWQ LPRLISGLFTIGFVMVTSCWLFFPKPLQRRADVRAFEEYAALRAFVRDCSHAVFGRPSITRSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.009G054900 [exp]	0	1
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.011G058400 [exp]	8.06	0.7498
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Potri.005G003000 [exp]	12.64	0.6529
AT4G33230			Plant invertase/pectin methyle...		Potri.006G134700 [exp]	14.56	0.7240
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Potri.001G133200 [exp]	15.29	0.6955	PCBERp5
AT5G62865			unknown protein		Potri.015G073800 [exp]	18.00	0.7285
AT1G34220			Regulator of Vps4 activity in ...		Potri.013G117100 [exp]	18.16	0.7002
					Potri.005G162201 [exp]	21.42	0.7246
AT5G23750			Remorin family protein (.1.2)		Potri.012G140800 [exp]	22.24	0.7051
AT1G62400		HT1	high leaf temperature 1, Prote...		Potri.012G080000 [exp]	22.24	0.7156
AT5G13810			Glutaredoxin family protein (....		Potri.003G198100 [exp]	25.78	0.7117

Compare expression of checked genes

Potri.009G054900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.