Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51970 329 / 1e-111 ATASAT1, ASAT1, ATSAT1 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) AT5G55350 280 / 1e-92 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55360 265 / 1e-86 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55340 262 / 2e-85 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55330 249 / 2e-80 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT1G34520 246 / 4e-79 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55380 244 / 1e-78 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT1G34500 234 / 2e-74 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55370 223 / 5e-70 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT1G34490 222 / 6e-70 MBOAT (membrane bound O-acyl transferase) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G014600 [exp] 409 / 1e-142 AT3G51970 299 / 1e-99 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.009G054900 [exp] 395 / 4e-137 AT3G51970 280 / 1e-92 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.009G055000 [exp] 387 / 3e-134 AT3G51970 314 / 7e-106 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.001G260700 [exp] 351 / 7e-120 AT3G51970 268 / 2e-87 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.001G106800 [exp] 335 / 1e-113 AT3G51970 255 / 1e-82 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.016G014700 [exp] 330 / 3e-111 AT5G55340 242 / 1e-77 MBOAT (membrane bound O-acyl transferase) family protein (.1) Potri.006G009800 [exp] 327 / 2e-110 AT3G51970 244 / 3e-78 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.008G145700 [exp] 279 / 5e-92 AT5G55340 264 / 1e-86 MBOAT (membrane bound O-acyl transferase) family protein (.1) Potri.006G009600 [exp] 134 / 1e-36 AT5G55360 145 / 3e-41 MBOAT (membrane bound O-acyl transferase) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039576 [exp] 414 / 7e-145 AT3G51970 329 / 7e-112 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Lus10022293 [exp] 202 / 7e-64 AT5G55340 178 / 2e-55 MBOAT (membrane bound O-acyl transferase) family protein (.1) Lus10003655 [exp] 150 / 3e-44 AT5G55380 126 / 5e-36 MBOAT (membrane bound O-acyl transferase) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0517 [poplar] [flax] MBOAT-like PF13813 [poplar] [flax] MBOAT_2 Membrane bound O-acyl transferase family
Representative CDS sequence Show only first row Show all	>Potri.009G055100.1 pacid=42772497 polypeptide=Potri.009G055100.1.p locus=Potri.009G055100 ID=Potri.009G055100.1.v4.1 annot-version=v4.1 ATGGAGGGCGAGATTCTTAACTTCATTAAGGTGTGGATTTCTGTCCTCGTTTCTCTGTGCTTTTGCTATTCCATTAGAAACATAGTTCCTAAAGGAACAA AAAGACTCCTTTCTGTACTGCCAGTAGTTTGCCTCTTTCTCTACCTCCCTCTTAAAATCTCCTCCGTGCATCTTGGTGGTAGCACAGCATTCTTCATCGC TTGGTTGGCCAACTTCAAGGTCCTACTCTTTGCTTTCGGTAAAGGTCCTCTGTCTTCAGATCCATCAATCTCACTACCACTTTTTATAGCTCTTGCTTGC TTACCAATCAAGATCCGACAAAAGGGTAAAAATAAAGAAACCCCATCTCCAAATCCTCGCCTAGATGGGCAAAGCAAAGAGAACCCAGCTCCTAGCAGAG GTAAAGAAGGCCTTCGGAATTATGCAGTAAAGGGTGTGCTCTTGGCCATGCTGATACGTGCATATGACTACAGCGATTACATTCATCCAAATGTTATCTT GATTATGTACTCTTTCCATGTCTACTTTCTCCTTGAAATCCTTCTAGCCGTGGGTGCAGTCCTGGCTCGAAATTTTCTAGGCCTGGAACTTGAACCTCAA TTCAACGAGCCATACCTTGCTACCTCGCTGCAGGACTTCTGGGGCTGCAGATGGAACCTCGTCGTCACCAGTATCCTACGCCCCACCGTATACGAACCCA CCCGTGCCATCGGATCCCATCTGATTGGTCGGAAATGGGCCCCACTTCCAGCTGTTTTCGCAACCTTTGTGGTATCGGCAATAATGCATGAGATCATTTT CTACTATCTGGGGCGCGTGAGGCCCAACTGGGAGATCTCGTGGTTCTTTCTGCTTCATGGATTTTGTTTAACGGCCGAGATCGCTCTAAAGAAGGTCTTG AACGACAGGTGGCGGCTGCCGAAGATGATCTCGACGATGTTAACTGTTGGGTTTGTTATGAGCACCGGCTTTTGGCTGTTCTTCCCCAAGTTTGTAGAGT ACAAGGTCGATGTTAGAGCGTTTGAAGAGTACGCGGAGATAGGCGCGTACATGAAGAATGTGAGTCAGAGCATAGCTCGTGTTTTACCGGGTCATTAA
AA sequence Show only first row Show all	>Potri.009G055100.1 pacid=42772497 polypeptide=Potri.009G055100.1.p locus=Potri.009G055100 ID=Potri.009G055100.1.v4.1 annot-version=v4.1 MEGEILNFIKVWISVLVSLCFCYSIRNIVPKGTKRLLSVLPVVCLFLYLPLKISSVHLGGSTAFFIAWLANFKVLLFAFGKGPLSSDPSISLPLFIALAC LPIKIRQKGKNKETPSPNPRLDGQSKENPAPSRGKEGLRNYAVKGVLLAMLIRAYDYSDYIHPNVILIMYSFHVYFLLEILLAVGAVLARNFLGLELEPQ FNEPYLATSLQDFWGCRWNLVVTSILRPTVYEPTRAIGSHLIGRKWAPLPAVFATFVVSAIMHEIIFYYLGRVRPNWEISWFFLLHGFCLTAEIALKKVL NDRWRLPKMISTMLTVGFVMSTGFWLFFPKFVEYKVDVRAFEEYAEIGAYMKNVSQSIARVLPGH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.009G055100 [exp]	0	1
AT5G16880			Target of Myb protein 1 (.1.2....		Potri.013G082500 [exp]	1.00	0.8834
AT5G13420			Aldolase-type TIM barrel famil...		Potri.001G068200 [exp]	1.41	0.8647
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.018G149700 [exp]	3.00	0.8440
AT2G19460			Protein of unknown function (D...		Potri.001G197700 [exp]	3.31	0.7867
AT3G02360			6-phosphogluconate dehydrogena...		Potri.017G106900 [exp]	4.58	0.8069	GND.2
AT2G05320			beta-1,2-N-acetylglucosaminylt...		Potri.014G167200 [exp]	5.91	0.7533
AT4G02890		UBQ14	Ubiquitin family protein (.1.2...		Potri.004G021500 [exp]	6.32	0.7886
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Potri.017G110700 [exp]	7.34	0.7717
					Potri.003G010800 [exp]	8.06	0.7812
					Potri.012G011490 [exp]	8.66	0.7631

Compare expression of checked genes

Potri.009G055100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.