Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13790 241 / 7e-80 MADS AGL15 AGAMOUS-like 15 (.1) AT3G57390 151 / 8e-45 MADS AGL18 AGAMOUS-like 18 (.1.2) AT3G57230 121 / 2e-33 MADS AGL16 AGAMOUS-like 16 (.1.2) AT4G37940 120 / 4e-33 MADS AGL21 AGAMOUS-like 21 (.1) AT3G61120 119 / 2e-32 MADS AGL13 AGAMOUS-like 13 (.1) AT4G24540 118 / 2e-32 MADS AGL24 AGAMOUS-like 24 (.1) AT5G51870 118 / 2e-32 MADS AGL71 AGAMOUS-like 71 (.1.2.3) AT2G22540 118 / 3e-32 MADS AGL22, SVP SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) AT5G62165 117 / 3e-32 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT2G22630 116 / 1e-31 MADS AGL17 AGAMOUS-like 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048700 [exp] 213 / 6e-69 AT3G57390 219 / 2e-71 AGAMOUS-like 18 (.1.2) Potri.002G109601 [exp] 128 / 3e-36 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2) Potri.007G010800 [exp] 127 / 9e-36 AT2G22540 329 / 3e-115 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.005G155300 [exp] 120 / 2e-33 AT2G22540 234 / 8e-78 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.014G074100 [exp] 120 / 3e-33 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.005G150501 [exp] 121 / 4e-33 AT3G57230 322 / 8e-112 AGAMOUS-like 16 (.1.2) Potri.002G105600 [exp] 120 / 5e-33 AT2G22540 288 / 3e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.012G133000 [exp] 117 / 4e-32 AT5G62165 218 / 3e-72 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Potri.012G132600 [exp] 117 / 5e-32 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005325 [exp] 309 / 1e-106 AT5G13790 249 / 7e-83 AGAMOUS-like 15 (.1) Lus10039580 [exp] 305 / 1e-104 AT5G13790 246 / 2e-81 AGAMOUS-like 15 (.1) Lus10008264 [exp] 119 / 5e-32 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10034663 [exp] 119 / 5e-32 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10005302 [exp] 118 / 5e-32 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10035942 [exp] 120 / 7e-32 AT2G22540 307 / 1e-104 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Lus10025719 [exp] 114 / 2e-31 AT2G22540 286 / 4e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Lus10031665 [exp] 112 / 5e-31 AT5G62165 179 / 8e-58 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Lus10017388 [exp] 114 / 2e-30 AT5G23260 220 / 4e-72 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10010184 [exp] 111 / 1e-29 AT5G23260 218 / 3e-71 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.009G055700.2 pacid=42772227 polypeptide=Potri.009G055700.2.p locus=Potri.009G055700 ID=Potri.009G055700.2.v4.1 annot-version=v4.1 ATGGGGAGAGGAAAGATTGAAATTAAGAAGATTGAGAATACAAATAGCAGGCAAGTCACGTTTTCAAAAAGAAGAGCCGGGTTGCTTAAAAAGGCTCAAG AGCTTGCCATTCTCTGTGATGCTGAGGTTGCTGTAATTGTTTTCTCAAATACTGGCAAGCTTTTTGAGTTTTCCAGTTCTGGCATGAAGAGAACACTTTC GAGATATAACAAGTTCTTAGATTCCCCAGAGCAGCCTAAAATAGAATACAAGGCTGAGAAACCAGATTTGAAAGAGGTCGATGTTCTAAAAGAAGAAATT GCAAAGCTACAAGTGAAACAGTTGCGACTTTCGGGAATGGACCTGACTGGATTGAGCTTGAAAGAATTGCAACAACTAGAAAATCAGTTAAATGAAGGGT TGTTATTCGTGAAAGAGAAAAAGGAGCACTTACTGATGGAACAATTAGAGCAATCAAGAGTACAGGAACAGCGGGCCATGCTGGAGAATGAAACTTTGCG CAGACAGATTGAGGAGCTTCGAGGTTTCTTTCCATCAACTGATCATCCAGTCCCAACTTATCTTGAATACTATGCTACAGAAAGGAAGAATCCTCCCATA GACAATGGCGCCACAAGCCCTCCAGTAGCCCACTATATTTGCTCCATTGAGAAAGTCGATTCAGACACAACTTTGCATTTAGGGCTGCCAACTGACACCA ATCGCAAGAGGAAAGCACTAGAAGGAGAAAGCCATTCCAATGATTCAGATAGTCGACCGAGCCTGCTGTAA
AA sequence Show only first row Show all	>Potri.009G055700.2 pacid=42772227 polypeptide=Potri.009G055700.2.p locus=Potri.009G055700 ID=Potri.009G055700.2.v4.1 annot-version=v4.1 MGRGKIEIKKIENTNSRQVTFSKRRAGLLKKAQELAILCDAEVAVIVFSNTGKLFEFSSSGMKRTLSRYNKFLDSPEQPKIEYKAEKPDLKEVDVLKEEI AKLQVKQLRLSGMDLTGLSLKELQQLENQLNEGLLFVKEKKEHLLMEQLEQSRVQEQRAMLENETLRRQIEELRGFFPSTDHPVPTYLEYYATERKNPPI DNGATSPPVAHYICSIEKVDSDTTLHLGLPTDTNRKRKALEGESHSNDSDSRPSLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Potri.009G055700 [exp]	0	1
AT4G25000		AMY1, AMY3, ATA...	alpha-amylase-like (.1)		Potri.014G029400 [exp]	2.44	0.8900	AMYVM1.2
AT1G25520			Uncharacterized protein family...		Potri.008G117900 [exp]	6.92	0.8928
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.003G119600 [exp]	9.27	0.8974
AT5G18130			unknown protein		Potri.013G057200 [exp]	10.48	0.8910
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.008G026700 [exp]	14.42	0.8985	PtrProT5
AT2G22570		NIC2, ATNIC1	A. THALIANA NICOTINAMIDASE 1, ...		Potri.007G116100 [exp]	18.76	0.8657
AT5G53730			Late embryogenesis abundant (L...		Potri.012G006000 [exp]	19.69	0.8925
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.007G090400 [exp]	20.34	0.8840
AT1G02305			Cysteine proteinases superfami...		Potri.002G184201 [exp]	28.84	0.8845
AT1G76520			Auxin efflux carrier family pr...		Potri.001G456400 [exp]	30.16	0.8895

Compare expression of checked genes

Potri.009G055700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.