Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005326 [exp] 197 / 5e-61 AT1G01550 61 / 3e-10 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2) Lus10039581 [exp] 195 / 4e-60 AT1G01550 63 / 5e-11 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF03087 [poplar] [flax] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.009G055800.1 pacid=42771898 polypeptide=Potri.009G055800.1.p locus=Potri.009G055800 ID=Potri.009G055800.1.v4.1 annot-version=v4.1 ATGGTACTCTTGGCGGAAAGGATTAGCAAGCTATACTCCAAGATGGAGAATCATCATCAGCACCAGCAACCAGAAGCCTTATCTGCTTCTTTACAGGCTT TTAGATCCGATGTTTCAAATTGCGTACACCAATTGTGCTTGGATTTGAAGCCCGGGTCAGAAACCCTGTCCTTCTCATGGGTTCTACAATGTTTTCAGCT TATACCCTCCATCAATAAAGCTTTTGCAAAGCTGGTTGTGGATATAGACTACCATATGAGCAAATGGAAGTCCCAGTCTGTTGAAGAATATCTCAAGTAT AGCTTGAGCTTGCTGGATCTTCTTAACTCTATTAGCTCTTCTCTGTCTCATTTAGAAAGAGGTCGGCTTTCTTTGGCTCATTCTTTGAGCCTCGTGAAGA GTTCACCTTCTTCGGCAATTGAGCATATCAAGGCAATCAAGTTCAACAGTTCAATCAAGAATTTCAAAGGCCAAGACAACATTGACGATGAGAAAGATAG ACCTTGCTCTGGTGAGGAATGGATCATTGATCAAGCTTTGATTGAATTAAAGAGTGTAGGATTCTGGGTATGTTATGTTCTGTTGGCTGGTCTGTCCGGT GATGCTAAGGCATACTTGGAGATGAGAAAATCGACTACTGGGATCTTCTCTAACTCTTCAGTGATCAAACTGGACATGAGTATTTCTGAAGCAGTAATGG ATAGAGGGGTTGTGTTAAAGGAGGTTAAAGAGCTGAAAGAAGCAGCGGATTGTATTGCAGCGGCCACAGCTAATGAAAAGGAAAGTTATCGAGCTGAGGA GATGCAGAGAAGATTGAAAGCATTCGAGCAGCTGCTGGATGGTTTGGACAAGGAAGTAAACTCTCTCTTCTCCAAAATATTGGCTGGAAGAAATGAATTG CTTGATGGCATTCGACATACGAAACAATAG
AA sequence Show only first row Show all	>Potri.009G055800.1 pacid=42771898 polypeptide=Potri.009G055800.1.p locus=Potri.009G055800 ID=Potri.009G055800.1.v4.1 annot-version=v4.1 MVLLAERISKLYSKMENHHQHQQPEALSASLQAFRSDVSNCVHQLCLDLKPGSETLSFSWVLQCFQLIPSINKAFAKLVVDIDYHMSKWKSQSVEEYLKY SLSLLDLLNSISSSLSHLERGRLSLAHSLSLVKSSPSSAIEHIKAIKFNSSIKNFKGQDNIDDEKDRPCSGEEWIIDQALIELKSVGFWVCYVLLAGLSG DAKAYLEMRKSTTGIFSNSSVIKLDMSISEAVMDRGVVLKEVKELKEAADCIAAATANEKESYRAEEMQRRLKAFEQLLDGLDKEVNSLFSKILAGRNEL LDGIRHTKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.009G055800 [exp]	0	1
AT1G14370		Kin1, PBL2, APK...	PBS1-like 2, kinase 1, protein...		Potri.009G020700 [exp]	5.09	0.8887
AT2G42360			RING/U-box superfamily protein...		Potri.019G091400 [exp]	5.19	0.9221
AT1G75388		CPuORF5	conserved peptide upstream ope...		Potri.005G119400 [exp]	5.47	0.8860
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.006G175500 [exp]	6.63	0.9059	Pt-ATTPS11.1
AT5G12340			unknown protein		Potri.001G276400 [exp]	11.74	0.9065
AT5G13330	AP2_ERF	RAP2.6L	related to AP2 6l (.1)		Potri.003G162500 [exp]	12.96	0.8865
AT3G56710		SIB1	sigma factor binding protein 1...		Potri.001G029700 [exp]	13.22	0.8704
					Potri.005G129350 [exp]	13.41	0.8814
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Potri.002G213100 [exp]	13.41	0.8906
AT3G62730			unknown protein		Potri.001G380000 [exp]	13.74	0.8723

Compare expression of checked genes

Potri.009G055800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.