Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63470 570 / 0 SCPL40 serine carboxypeptidase-like 40 (.1) AT4G30610 424 / 3e-145 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT3G52020 415 / 5e-141 SCPL39 serine carboxypeptidase-like 39 (.1) AT2G24000 408 / 7e-139 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT3G52000 402 / 2e-136 SCPL36 serine carboxypeptidase-like 36 (.1) AT2G35780 399 / 1e-135 SCPL26 serine carboxypeptidase-like 26 (.1) AT3G02110 397 / 2e-134 SCPL25 serine carboxypeptidase-like 25 (.1) AT2G24010 395 / 3e-134 SCPL23 serine carboxypeptidase-like 23 (.1) AT5G23210 396 / 9e-134 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT2G05850 394 / 6e-133 SCPL38 serine carboxypeptidase-like 38 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G261100 [exp] 776 / 0 AT3G63470 611 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.009G056000 [exp] 602 / 0 AT3G63470 557 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.004G120100 [exp] 409 / 5e-139 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.018G105700 [exp] 404 / 3e-137 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.006G183200 [exp] 403 / 5e-137 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.007G072300 [exp] 403 / 8e-137 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.017G094100 [exp] 402 / 1e-136 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.005G091700 [exp] 395 / 1e-133 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.008G041800 [exp] 391 / 2e-132 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019747 [exp] 498 / 2e-173 AT3G63470 502 / 4e-175 serine carboxypeptidase-like 40 (.1) Lus10016377 [exp] 494 / 4e-172 AT3G63470 501 / 2e-174 serine carboxypeptidase-like 40 (.1) Lus10019749 [exp] 468 / 9e-162 AT3G63470 478 / 1e-165 serine carboxypeptidase-like 40 (.1) Lus10019748 [exp] 466 / 9e-160 AT3G63470 471 / 2e-161 serine carboxypeptidase-like 40 (.1) Lus10015382 [exp] 414 / 1e-140 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10005327 [exp] 410 / 2e-139 AT3G63470 449 / 1e-154 serine carboxypeptidase-like 40 (.1) Lus10023505 [exp] 399 / 2e-135 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10040387 [exp] 392 / 1e-132 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10015489 [exp] 391 / 8e-132 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10019954 [exp] 390 / 3e-131 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.009G055900.1 pacid=42772401 polypeptide=Potri.009G055900.1.p locus=Potri.009G055900 ID=Potri.009G055900.1.v4.1 annot-version=v4.1 ATGGAAAGTAACCCATGCTTGCTTCTCGTTGTCCTTCTCGTTGTTTCTTGTTCTGTAGTTCAAAGCGAAGCGGCTGGCAAGAGGCAAAGCGAAGCACTTG GCCATCTCTACAAGGCCAAGTACTCGAAGGGAAATCTTAGCGTTGACAATAGTCTTTTTCAAGCAATTCAACATGTAGATACATCCAGGTTTCATGCTCA AGAGGGATTAAAAGAGAAGGATAGAATAGAGAGCTTGCCGGGGCAGCCAAAAGTAGAGTTCTCGCAGTATGGAGGCTATGTTACCGTTGATAAATCTACT GGACGAGCACTCTATTATTACTTTGCCGAGGCTCAACATTCTAATAAAGAGTCTTTGCCTCTTCTTCTCTGGCTCAATGGAGGCCCTGGTTGTTCATCTT TGTCATATGGTGCAATGCAAGAACTTGGACCATTTCGAGTATATAGTGATGGCCAAGCACTTTATAAAAATAGACACTCATGGAATTATGCTGCAAATGT TTTGTTTCTTGAATCTCCTGCGGGAGTAGGGTTTTCATACTCAAACACGACATCAGATTACAAGAAAAGTGGAGATAAAATGACTGCTGAAGATAATTAT GTGTTCTTAGTGAATTGGCTAGAGAGGTTTCCTGAATACAAAGATAGAGATTTCTACATATCAGGTGAAAGCTATGCCGGGCATTATGTGCCTCAGCTTG CACACACTATTCTTTACCATAACAACAAGGCTAAGAAGACCATTGTCAATCTCAAAGGAATTCTAATTGGGAATGCAGTGATCAATGACGAAACTGATAG TATAGGGATGTATAGCTATTTCGGAAACCATGCTCTAATCTCAGATGAGATGGTTCAGAAAATACTAAAATCTTGCGATTTCTCACCCAATGCGACATCC CAGTCTGATGAGTGCAATCAAGCAGCTGAAGCAGCAGGCAAGGATACTAGTTATATCAATATATACAACATCTATGGTCCATTGTGCCTTCGTGAGGGTA CCACAGCAAAGCCTAAGAAACCTTCTCTGGTGGATTTTGATCCATGTTCTGATTATTATGTGTATGCTTATCTTAATCGACCTGATGTCCAAGAAGCCAT GCACGCCAATGTCACCAAACTCACTCATGATTGGGAACCTTGTAGTGATATCATACCAAGTTGGTCAGATAGCCCTTCAACAATTATTCCGCTACTGCAA GAATTCATGGCAAACGGCCTTCGAGTGTGGCTATTTAGTGGTGATACAGACGGAAGGGTGCCATTTACTTCAACTCAATATTCTATAAATAAGATGAAAC TTCAAGTTAAAACCGAATGGCATCCTTGGTACGTCAAAGGGGAGGTGGGAGGATACACACAAGTGTATAAAGGAGATTTAACATTCGCCACCGTGAGAGG GGCAGGGCATCAAGTGCCAAGCTATCAGCCATTGAGAGCACTTTCATTAGTCAAGCACTTCCTTGATGGCACGCCTCTTCCAGATACTACGAGATATTAA
AA sequence Show only first row Show all	>Potri.009G055900.1 pacid=42772401 polypeptide=Potri.009G055900.1.p locus=Potri.009G055900 ID=Potri.009G055900.1.v4.1 annot-version=v4.1 MESNPCLLLVVLLVVSCSVVQSEAAGKRQSEALGHLYKAKYSKGNLSVDNSLFQAIQHVDTSRFHAQEGLKEKDRIESLPGQPKVEFSQYGGYVTVDKST GRALYYYFAEAQHSNKESLPLLLWLNGGPGCSSLSYGAMQELGPFRVYSDGQALYKNRHSWNYAANVLFLESPAGVGFSYSNTTSDYKKSGDKMTAEDNY VFLVNWLERFPEYKDRDFYISGESYAGHYVPQLAHTILYHNNKAKKTIVNLKGILIGNAVINDETDSIGMYSYFGNHALISDEMVQKILKSCDFSPNATS QSDECNQAAEAAGKDTSYINIYNIYGPLCLREGTTAKPKKPSLVDFDPCSDYYVYAYLNRPDVQEAMHANVTKLTHDWEPCSDIIPSWSDSPSTIIPLLQ EFMANGLRVWLFSGDTDGRVPFTSTQYSINKMKLQVKTEWHPWYVKGEVGGYTQVYKGDLTFATVRGAGHQVPSYQPLRALSLVKHFLDGTPLPDTTRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Potri.009G055900 [exp]	0	1
AT1G04040			HAD superfamily, subfamily III...		Potri.002G257700 [exp]	2.00	0.9551
AT1G67180			zinc finger (C3HC4-type RING f...		Potri.004G106000 [exp]	3.87	0.9113
AT3G44610			Protein kinase superfamily pro...		Potri.010G236200 [exp]	4.69	0.9423
AT5G66920		SKS17	SKU5 similar 17 (.1)		Potri.007G038300 [exp]	6.00	0.9409
AT5G06940			Leucine-rich repeat receptor-l...		Potri.016G051600 [exp]	6.92	0.9257
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.001G120300 [exp]	7.41	0.9270	SKU5.2
AT5G59840			Ras-related small GTP-binding ...		Potri.001G236100 [exp]	8.00	0.9226	Pt-RAB8.2
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Potri.010G193800 [exp]	8.48	0.9206
AT2G30890			Cytochrome b561/ferric reducta...		Potri.002G057900 [exp]	10.24	0.9255
AT1G32860			Glycosyl hydrolase superfamily...		Potri.001G449100 [exp]	13.49	0.9116

Compare expression of checked genes

Potri.009G055900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.