Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52030 475 / 1e-166 F-box family protein with WD40/YVTN repeat doamin (.1.2) AT1G18080 52 / 3e-07 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 51 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 50 / 2e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G22040 50 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 49 / 4e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18130 46 / 4e-05 RACK1C_AT receptor for activated C kinase 1C (.1) AT5G16750 45 / 9e-05 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT5G64730 43 / 0.0003 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49040 43 / 0.0004 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G051900 [exp] 54 / 1e-07 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 53 / 1e-07 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 50 / 4e-06 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G049500 [exp] 48 / 1e-05 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.012G060800 [exp] 47 / 2e-05 AT1G49040 1782 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.013G079600 [exp] 46 / 4e-05 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.009G109500 [exp] 45 / 6e-05 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G060700 [exp] 45 / 0.0001 AT5G05970 862 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G052700 [exp] 44 / 0.0001 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005328 [exp] 531 / 0 AT3G52030 477 / 1e-167 F-box family protein with WD40/YVTN repeat doamin (.1.2) Lus10039582 [exp] 355 / 4e-116 AT3G52020 372 / 1e-121 serine carboxypeptidase-like 39 (.1) Lus10023563 [exp] 50 / 4e-06 AT1G49040 1743 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10040449 [exp] 49 / 6e-06 AT1G49040 1816 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10006916 [exp] 48 / 6e-06 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 47 / 2e-05 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 45 / 9e-05 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10001301 [exp] 45 / 0.0001 AT5G16750 1159 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10011224 [exp] 45 / 0.0001 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10017570 [exp] 45 / 0.0001 AT1G18080 561 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.009G056500.2 pacid=42772428 polypeptide=Potri.009G056500.2.p locus=Potri.009G056500 ID=Potri.009G056500.2.v4.1 annot-version=v4.1 ATGGGCCCGCCACCAGGAAGCAAACGGTCTCCGCCGAAGAAGAGGAGCTCGACAACTCCGACATCAATAAGGTCGCTGGAACATGACGCACTCTGTATCA TATTCTCCTACCTCGGTCTCTTCGATGTCGTTCGCTCCTCTGCCGTTTGCAAATTCTGGAATGAGATCATAAAAAGATCGAAGTTACTGCAATTACTCTA TTTGAAGCAACAAAGAAGAAGTAGCAGAAGTGATTTTTCAGAGGAATCATTGAATGTGTATTTGGAAGAGTTAGCAATAGAGCACCAAAGGCAATCTTTA GTACAAGGTTCTCTTCACATTGATCAATGGAAAGGGCATTCTCTTGGGGTTGACCAGTGCCGTATGAAGAGGGGCTTGGTTCTTACCGGTGTTGGTGATA AGGTTATGCGTCTCTGGTCACTAGAAAGCTACAAATGCATAGAAGAATATTCTATTCCAGATGGAGTCCCTCTGGTTGACTTTGATTTTGATGAGAGCAA GATTGTTGGTTTGGTTGGTACACGAATATGCATATGGAGGCGCAATGGGCAGAGAAGTATATTCCCCTCACGTGAAGGCCAATTCATGAAGGGTTCATGC ATGCGTTACTTTGATCCAGAGGCTGTGGTTGGATGTGAAGACGGGACAGCTCGTGTGTTTGACATGTACAGTAAGAAATGTTCTCGAATCGTTAGGATGC ACACTGAACCTGTGACTTGTTTATCTTTAAGTGAAGATCAATTAATTATTAGTGGTTCCTCTCTTGGAAGAATCGCAATATCTGGTCTTTCATCTGACCA GAGGGTGGCTACTCTGAGACCCACTGATTCCACAGGCATAAAGAGTTTGTGTTTCAACCCTGTTTCTCATCAAGTGTTTGCTGGAACTACTGCTGGATAT GCTTCTTGTTGGGATCTTAGGACTATGAGACAACTTTGGAAAACACGGGTGAGTCCAAATGTTGTATATTCTTTGCAACACATGCGTAGCGACACTTCAA CACTGGTAGTTGGTGGAATTGATGGCGTGCTGCGTGTTTTAGATCAGAACACTGGAGAAGTCCTTTCAAGCTATGTCATGGACCATGGCACCTCGACAAG TTCTGGGTATACTCATGGAGTAATAGAAAGGAAGATAGGAAAGAGGCTTCCTTATGACTACAACATTGACAGAATCCCTAAAACTGTTCGACCTCCTATC ACATGCTTGGCTGTTGGGATGCAGAAGGTCATCACGACACACAACATCAAGAACATCAGAATGTGGAAATTCAACAATTTGAGGGAACTAAACTAG
AA sequence Show only first row Show all	>Potri.009G056500.2 pacid=42772428 polypeptide=Potri.009G056500.2.p locus=Potri.009G056500 ID=Potri.009G056500.2.v4.1 annot-version=v4.1 MGPPPGSKRSPPKKRSSTTPTSIRSLEHDALCIIFSYLGLFDVVRSSAVCKFWNEIIKRSKLLQLLYLKQQRRSSRSDFSEESLNVYLEELAIEHQRQSL VQGSLHIDQWKGHSLGVDQCRMKRGLVLTGVGDKVMRLWSLESYKCIEEYSIPDGVPLVDFDFDESKIVGLVGTRICIWRRNGQRSIFPSREGQFMKGSC MRYFDPEAVVGCEDGTARVFDMYSKKCSRIVRMHTEPVTCLSLSEDQLIISGSSLGRIAISGLSSDQRVATLRPTDSTGIKSLCFNPVSHQVFAGTTAGY ASCWDLRTMRQLWKTRVSPNVVYSLQHMRSDTSTLVVGGIDGVLRVLDQNTGEVLSSYVMDHGTSTSSGYTHGVIERKIGKRLPYDYNIDRIPKTVRPPI TCLAVGMQKVITTHNIKNIRMWKFNNLRELN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52030			F-box family protein with WD40...		Potri.009G056500 [exp]	0	1
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Potri.005G128800 [exp]	3.16	0.6683
AT1G21760		ATFBP7	F-box protein 7 (.1)		Potri.005G178600 [exp]	5.19	0.6811
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Potri.005G138600 [exp]	5.19	0.6665
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Potri.001G471700 [exp]	12.96	0.6417	ARP8.2,ARP908
AT2G20050			protein serine/threonine phosp...		Potri.018G084900 [exp]	14.28	0.6148
AT5G43822			Pentatricopeptide repeat (PPR)...		Potri.005G253200 [exp]	19.23	0.6614
AT5G62570			Calmodulin binding protein-lik...		Potri.015G071800 [exp]	20.49	0.6378
AT5G54540			Uncharacterised conserved prot...		Potri.011G130000 [exp]	21.63	0.6287
AT3G49490			unknown protein		Potri.015G003700 [exp]	25.39	0.5773
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.002G241900 [exp]	26.72	0.6460

Compare expression of checked genes

Potri.009G056500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.