Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPL1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63490 426 / 4e-150 EMB3126 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2) AT2G42710 168 / 2e-48 Ribosomal protein L1p/L10e family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262400 [exp] 545 / 0 AT3G63490 427 / 2e-150 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2) Potri.014G143000 [exp] 171 / 2e-49 AT2G42710 367 / 4e-125 Ribosomal protein L1p/L10e family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005337 [exp] 454 / 1e-160 AT3G63490 476 / 2e-169 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2) Lus10039589 [exp] 442 / 8e-156 AT3G63490 476 / 2e-169 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2) Lus10036988 [exp] 115 / 1e-28 AT2G42710 398 / 4e-137 Ribosomal protein L1p/L10e family (.1) Lus10015809 [exp] 103 / 2e-26 AT2G42710 227 / 2e-73 Ribosomal protein L1p/L10e family (.1) Lus10040258 [exp] 88 / 9e-19 AT2G39830 653 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10004691 [exp] 53 / 8e-08 AT2G42710 147 / 5e-42 Ribosomal protein L1p/L10e family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00687 [poplar] [flax] Ribosomal_L1 Ribosomal protein L1p/L10e family
Representative CDS sequence Show only first row Show all	>Potri.009G057100.3 pacid=42772821 polypeptide=Potri.009G057100.3.p locus=Potri.009G057100 ID=Potri.009G057100.3.v4.1 annot-version=v4.1 ATGGCAACGACAACAACATGTACTTCTACAACATCTTCCTTCATGCTAACGTACGCCACCTCCACAGTACACCCACAAGACCTAACCCCATCTCTTCTTT CTTTTAAGCCCCAAATTTTCTCTGTCTGCCCATTGATCTCAGACAGGAAATCAAGCAATAGGATCAACTTTTATAGCCAAACAGAGGCAAAGTCTAGACC TTGCAGAGTGGTTGTGGCTGCTGCTTTGGCTGCAGAGGCGGAGGTGGGTGAGGAGGTGGAAGAGACAGAGGGAGAAGGAGGTGGTGTGGCAACTGCTACA GTTACTCCTACTAAGCCTAAGAAAGGGAAGGCTGCGTTGCCTTTAAAGAGAGACAGAACAAGGTCTAAGAGATTCTTGGAAATTCAAAAATTGAGGGAAA CAAAAAAGGAGTACGACCTGGGGACAGCAATATCTATGCTAAAGAAAACAGCAAACACAAAGTTTGTTGAAAGTGTTGAAGCTCATTTTCGTCTTAACAT CGATCCCAAATATAACGACCAACAGCTGAGAGCAACAGTAAATTTGCCCAAGGGAACAGGACAAACTGTTAAAGTTGCAGTGCTCACCCAAGGTGAAAAG TTCGATGAAGCAAAAAATGCAGGAGCAGATTTGGTTGGTGGTGAGGACCTGATACAACAAATAAAGGGAGGATTTATGCAGTTTGATAAATTAATTGCAT CTCCGGATATGATGCCTAAGGTTGCCAGCTTAGGTAAGATTCTAGGACCACGAGGACTCATGCCAAATCCAAAAGCTGGTACTGTTACAACTGACATACC TCAGGCAATAGCTGAATTCAAAAGGGGGAAAGTTGAGTACAGAGCAGATAAAACTGGGATTGTTCACATACCTTTCGGGAAAGCTGATTTCTCAGAGGAA GACCTCCTTGTAAACTTGCTAGCTGCGGTAAAATCAGCAGAAGCAAACAAGCCATCAGGTGCGAAGGGAGTGTACTGGAAAAGCGCACATATATGCTCAT CAATGGGGCCTTCCATTCGGTTAAATACAAGGGAGATGCTCGAATACAAGCTTCCGTCGAATGTTTGA
AA sequence Show only first row Show all	>Potri.009G057100.3 pacid=42772821 polypeptide=Potri.009G057100.3.p locus=Potri.009G057100 ID=Potri.009G057100.3.v4.1 annot-version=v4.1 MATTTTCTSTTSSFMLTYATSTVHPQDLTPSLLSFKPQIFSVCPLISDRKSSNRINFYSQTEAKSRPCRVVVAAALAAEAEVGEEVEETEGEGGGVATAT VTPTKPKKGKAALPLKRDRTRSKRFLEIQKLRETKKEYDLGTAISMLKKTANTKFVESVEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVKVAVLTQGEK FDEAKNAGADLVGGEDLIQQIKGGFMQFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTTDIPQAIAEFKRGKVEYRADKTGIVHIPFGKADFSEE DLLVNLLAAVKSAEANKPSGAKGVYWKSAHICSSMGPSIRLNTREMLEYKLPSNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.009G057100 [exp]	0	1	Pt-RPL1.1
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Potri.016G090700 [exp]	1.00	0.9922	RBP29.1
AT2G38780			unknown protein		Potri.001G024200 [exp]	2.44	0.9835
AT4G24770		CP31, ATRBP33, ...	ARABIDOPSIS THALIANA RNA BINDI...		Potri.012G090200 [exp]	3.87	0.9831
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Potri.003G083300 [exp]	4.47	0.9790
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Potri.003G103300 [exp]	4.79	0.9720
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.001G262400 [exp]	6.32	0.9828	RPL1.2
AT3G17170		RFC3	REGULATOR OF FATTY-ACID COMPOS...		Potri.008G101900 [exp]	7.74	0.9753	Pt-RFC3.1
AT4G37920			unknown protein		Potri.007G000400 [exp]	7.93	0.9777
AT5G48545		HINT3	histidine triad nucleotide-bin...		Potri.002G248800 [exp]	7.93	0.9736
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Potri.010G207300 [exp]	8.00	0.9778

Compare expression of checked genes

Potri.009G057100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.