Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13720 307 / 1e-105 Uncharacterised protein family (UPF0114) (.1) AT4G19390 169 / 2e-51 Uncharacterised protein family (UPF0114) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G234600 [exp] 169 / 1e-51 AT4G19390 246 / 1e-81 Uncharacterised protein family (UPF0114) (.1) Potri.014G039000 [exp] 134 / 2e-37 AT4G19390 163 / 1e-48 Uncharacterised protein family (UPF0114) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019743 [exp] 349 / 4e-122 AT5G13720 340 / 6e-119 Uncharacterised protein family (UPF0114) (.1) Lus10029480 [exp] 332 / 9e-115 AT5G13720 328 / 2e-113 Uncharacterised protein family (UPF0114) (.1) Lus10016380 [exp] 324 / 2e-111 AT5G13720 317 / 2e-108 Uncharacterised protein family (UPF0114) (.1) Lus10037258 [exp] 161 / 3e-48 AT4G19390 245 / 3e-81 Uncharacterised protein family (UPF0114) (.1) Lus10035674 [exp] 155 / 1e-42 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10032866 [exp] 124 / 2e-33 AT4G19390 166 / 6e-50 Uncharacterised protein family (UPF0114) (.1) Lus10018793 [exp] 122 / 3e-33 AT4G19390 169 / 1e-51 Uncharacterised protein family (UPF0114) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03350 [poplar] [flax] UPF0114 Uncharacterized protein family, UPF0114
Representative CDS sequence Show only first row Show all	>Potri.009G057300.1 pacid=42771680 polypeptide=Potri.009G057300.1.p locus=Potri.009G057300 ID=Potri.009G057300.1.v4.1 annot-version=v4.1 ATGGCTCTTTTTGCTTCCATCTCCACGTCTCTGCTCTCTATATCAACTACCCAAATCCCCCGCCCTTTAAACTTTAAGAGGCGACTTTTCTGTCCCTTGG CTACTTTAAGACCTCCTTCCCCTGAATCACCACCACCAGTTTCCTCTAAGAACCACCACCCATCAAAGCCTTTGGTTGAGTCATCTAGAGCTCCTCCTGA TTCAGGCTTCAACTACGCCCTTGCTAATCCATCTGCCAACCGAGTTGTTCAGTTCATTCGTTCCACTGAGTCAAACATTGAGAGGGCAATTTTTGACTTT CGCTTCTTGGCGCTTCTGGCTGTAGTAGGCTCACTTGCTGGTTCCCTCTTGTGCTTTCTAAATGGCTGTGTTTACATTATTGATGCTTACAGAATTTATT GGACAAGCTGTGTCAAAGGAATTCATACAGGAAAGATGGTTCTACGATTAGTTGAAGCTATTGATGTTTATCTTGCTGGGACTGTGATGCTTATATTTGG CATGGGCTTGTATGGATTATTCATCTGCAATATTCCTCCTGATGCTCCTGCTAGTGATGATCGTGCCCTGAAAGGCTCATCCTTGTTTGGAATGTTTGCC TTGAAGGAAAGGCCAAAATGGATGAAAATCAGCTCACTCGATGAACTGAAGACAAAAGTGGGACATGTTATTGTCATGATTCTTTTAGTAAAGATGTTTG AGAGGAGCAAGATGGTGACGATAGCCACTGGTGTAGATCTACTAAGCTATTCTGTTTGTATTTTCTTGTCATCTGCTTCTTTGTACATCCTTTCAAACCT GCACAAGTCAGAATAG
AA sequence Show only first row Show all	>Potri.009G057300.1 pacid=42771680 polypeptide=Potri.009G057300.1.p locus=Potri.009G057300 ID=Potri.009G057300.1.v4.1 annot-version=v4.1 MALFASISTSLLSISTTQIPRPLNFKRRLFCPLATLRPPSPESPPPVSSKNHHPSKPLVESSRAPPDSGFNYALANPSANRVVQFIRSTESNIERAIFDF RFLALLAVVGSLAGSLLCFLNGCVYIIDAYRIYWTSCVKGIHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFICNIPPDAPASDDRALKGSSLFGMFA LKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGVDLLSYSVCIFLSSASLYILSNLHKSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13720			Uncharacterised protein family...		Potri.009G057300 [exp]	0	1
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Potri.006G127200 [exp]	1.41	0.9776	RBP29.2
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Potri.001G237800 [exp]	2.44	0.9814	ALB3.2
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Potri.014G162200 [exp]	2.44	0.9763
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Potri.010G051900 [exp]	6.24	0.9635
AT1G68830		STN7	STT7 homolog STN7 (.1)		Potri.008G116800 [exp]	6.63	0.9739
AT1G09130			ATP-dependent caseinolytic (Cl...		Potri.013G017166 [exp]	10.00	0.9731
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Potri.004G142300 [exp]	10.24	0.9627
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.009G060500 [exp]	10.67	0.9728	CCD1.5
AT2G37240			Thioredoxin superfamily protei...		Potri.006G133100 [exp]	12.00	0.9698
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Potri.013G088100 [exp]	12.40	0.9665

Compare expression of checked genes

Potri.009G057300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.