Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CCR.8
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 427 / 6e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 372 / 2e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09480 372 / 1e-128 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 370 / 1e-128 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 362 / 2e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 351 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G35420 270 / 4e-89 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G15950 266 / 2e-87 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT5G58490 258 / 1e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057600 [exp] 473 / 4e-169 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 452 / 3e-161 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 443 / 2e-157 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057800 [exp] 443 / 3e-157 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G045000 [exp] 268 / 2e-88 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.003G181400 [exp] 266 / 9e-88 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.008G120200 [exp] 265 / 3e-87 AT1G68540 505 / 0.0 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G046400 [exp] 263 / 2e-86 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 263 / 3e-86 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002300 [exp] 444 / 6e-158 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 444 / 2e-157 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 443 / 3e-157 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 441 / 2e-156 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 438 / 2e-155 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 422 / 4e-149 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 395 / 2e-138 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019732 [exp] 358 / 5e-124 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024130 [exp] 374 / 8e-123 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2) Lus10026072 [exp] 362 / 9e-122 AT5G19440 339 / 1e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.009G057500.1 pacid=42772125 polypeptide=Potri.009G057500.1.p locus=Potri.009G057500 ID=Potri.009G057500.1.v4.1 annot-version=v4.1 ATGAGTGCAGAAGGAAAAGTAGTTTGTGTAACAGGAGCGTCAGGCTACATTGCCTCATGGCTAGTCAAGCTCTTACTCCACCGTGGTTATACTGTCAAAG CCACTGTTCGTGATCCAAATGACCCAAAGAGAACTGAACACTTACTCAATCTAGATGGAGCTAAAGAAAGACTTCACTTATTTAAAGCAAATTTAGTTGA AGAGGGGTCTTTTGATCCCGTAGTGGATGGATGTGAAAGCGTGTTTCACGTGGCTTCTCCTGTATTACTCGGGACAAATATTGATCCACAGGCAGATCTG ATTGAACCTGCAGTAAAGGGAACCCTAAACGTTCTCAAGTCATGTGCCAAATTTCCTTCTGTCAAGAGAGTGATTCTAACATCTTCCATGGCTTCGGTTA TTTTCAATGGAAAACCATTGACCCCTGGCGTGGTAGTGGATGAGACTTGGTTTTCAGATTCTGCGTTTTGTGTGTCAAATAAGCTTTGGTATATGGCTTC AAAGACTTTAGCTGAGGAGGCTGCTTGGAAATTTGTAAAAGAAAAAGGAATTGACATGGTTACAATTAATCCAGGCTTTGTGATTGGTCCTCTCTTACAG CCAACTCTTAAATCCACTGCCGAGCTGTTTCTGGACCGCATAAATGGAGGAGCACCAGGATTGCCAAGTGAAATTTATAGATTTGTTGATGTGAGAGATG TTGCTTATGCACACATTCAAGCACTTGAAATACCTTCAGCCAGTGGTAGATATTGTTTAGTTGGAAGAGTTGCGCACTTCTCTGATGCAGTGAAGATTGC GCATGAACTATACCCTACTTTGCCCCTTCCTGAAAAATGTGCAGATGATAAGCCTTCTCCATTGAATTACGAGGTATCAAAAGAGAAAGCAAAGACTCTG GGTCTTGACTTCACTCCTCTGGAGGTGAGCGTGAAGGACATCCTTGAAAGTTTAAAGGAGAAGGGCTTCCTTAATGTCTGA
AA sequence Show only first row Show all	>Potri.009G057500.1 pacid=42772125 polypeptide=Potri.009G057500.1.p locus=Potri.009G057500 ID=Potri.009G057500.1.v4.1 annot-version=v4.1 MSAEGKVVCVTGASGYIASWLVKLLLHRGYTVKATVRDPNDPKRTEHLLNLDGAKERLHLFKANLVEEGSFDPVVDGCESVFHVASPVLLGTNIDPQADL IEPAVKGTLNVLKSCAKFPSVKRVILTSSMASVIFNGKPLTPGVVVDETWFSDSAFCVSNKLWYMASKTLAEEAAWKFVKEKGIDMVTINPGFVIGPLLQ PTLKSTAELFLDRINGGAPGLPSEIYRFVDVRDVAYAHIQALEIPSASGRYCLVGRVAHFSDAVKIAHELYPTLPLPEKCADDKPSPLNYEVSKEKAKTL GLDFTPLEVSVKDILESLKEKGFLNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19440			NAD(P)-binding Rossmann-fold s...		Potri.009G057500 [exp]	0	1	CCR.8
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Potri.006G005700 [exp]	3.16	0.7905
AT5G48480			Lactoylglutathione lyase / gly...		Potri.002G251200 [exp]	5.47	0.7442
AT1G42960			unknown protein		Potri.007G064100 [exp]	6.00	0.7854
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Potri.002G254900 [exp]	13.49	0.7882	FDH1
AT1G26340		B5 #6, B5#6, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.010G156900 [exp]	16.61	0.7075	B5.2
AT1G71260		WHY2, ATWHY2	WHIRLY 2 (.1)		Potri.003G048700 [exp]	16.97	0.7128
AT1G61620			phosphoinositide binding (.1)		Potri.011G040000 [exp]	18.33	0.6981
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Potri.015G070600 [exp]	19.74	0.7541	ALDH10.2
AT5G11880			Pyridoxal-dependent decarboxyl...		Potri.009G119300 [exp]	20.32	0.7251
AT2G44310			Calcium-binding EF-hand family...		Potri.001G231100 [exp]	24.18	0.6724

Compare expression of checked genes

Potri.009G057500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.