Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CCRL2,CCR.9
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19440 475 / 5e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 468 / 4e-167 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 397 / 1e-138 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 395 / 1e-138 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 395 / 1e-138 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09500 377 / 3e-131 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G66800 367 / 1e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 278 / 1e-92 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G15950 276 / 3e-91 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT5G58490 262 / 2e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G052000 [exp] 489 / 1e-175 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 484 / 2e-173 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057500 [exp] 472 / 7e-169 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057800 [exp] 434 / 1e-153 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G181400 [exp] 283 / 2e-94 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045000 [exp] 276 / 3e-91 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.008G138600 [exp] 275 / 3e-91 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.001G045500 [exp] 275 / 5e-91 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 274 / 8e-91 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039595 [exp] 545 / 0 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 482 / 8e-173 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 442 / 7e-157 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 439 / 6e-156 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 435 / 4e-154 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029484 [exp] 423 / 3e-150 AT5G19440 355 / 1e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 423 / 1e-149 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 394 / 8e-138 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024130 [exp] 393 / 3e-130 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2) Lus10019732 [exp] 345 / 6e-119 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.009G057600.1 pacid=42772200 polypeptide=Potri.009G057600.1.p locus=Potri.009G057600 ID=Potri.009G057600.1.v4.1 annot-version=v4.1 ATGAGTGGAGAAGGGAAGGTGGTGAGTGTAACTGGAGCATCCGGGTACATTGCTTCATGGCTTGTCAAGTTGTTGCTTGAACGTGGGTACACAGTCAAAG CCTCAGTGCGTGACCCAAATGATGCAAAGAAAACTGAACACTTGCTTGCACTCGATGGAGCTAAGGAAAGACTGCAGTTGTTCAAAGCAGACTTACTGGA TGAAGGATCTTTTGATCCTGTGGTTGAGGGATGTGAATGCGTTTTCCATACTGCATCCCCATTTTATTTCACTGTCAATGATCCTCAGGCAGAACTTGTT GACCCTGCATTGAAGGGAACAGTTAATGTTCTTAGGTCATGCACTAAAATTCCTTCTATCAAAAGAGTTGTCATAACATCATCCATGGCAGCAGTTGTAT TCAATGGGAAATCTCTTGCACCCGATGTAGTAGTTGATGAGACATGGTTTTCAGATTCAGATTTTTGTGAGAAATCAAAGCTATGGTACCATCTTTCAAA AACATTAGCAGAAGAAGCTGCTTGGAAGTTCACTAAAGAGAATGGAATTGACATGGTCACTTTAAATCCAGGGTTGGTGATCGGCCCTCTCTTGCAGCCA ACACTTAATCAAAGTGCAGAGTCGGTTCTTGACCTTATAAATGGGGCAAAAAGCTATCCAAATACAACGTATAGATGGGTAGATGTTAGAGATGTTGCCA ATGCACATATCTATGCCTTGGAGAATCCTTCAGCTAACGGGCGATACTGTTTAGTAGGGACTGTTATACACTCTTCTGAGGCTGTGAAGATTTTAAGCAA GCTTTACCCTGATCTCACTATTCCTAAACAGTGTGCAGATGATAAGCCTCCCATGCCAAAATATCAGGTATCCAAAGAGAGAGCAGCAAGTCTGGGTGTC AAGTATACTCCTCTTGAGGCAAGTCTAAAGGATACTATCGAAAGCTTGAAGGAGAAGAACTTTGTTAGCTTCTGA
AA sequence Show only first row Show all	>Potri.009G057600.1 pacid=42772200 polypeptide=Potri.009G057600.1.p locus=Potri.009G057600 ID=Potri.009G057600.1.v4.1 annot-version=v4.1 MSGEGKVVSVTGASGYIASWLVKLLLERGYTVKASVRDPNDAKKTEHLLALDGAKERLQLFKADLLDEGSFDPVVEGCECVFHTASPFYFTVNDPQAELV DPALKGTVNVLRSCTKIPSIKRVVITSSMAAVVFNGKSLAPDVVVDETWFSDSDFCEKSKLWYHLSKTLAEEAAWKFTKENGIDMVTLNPGLVIGPLLQP TLNQSAESVLDLINGAKSYPNTTYRWVDVRDVANAHIYALENPSANGRYCLVGTVIHSSEAVKILSKLYPDLTIPKQCADDKPPMPKYQVSKERAASLGV KYTPLEASLKDTIESLKEKNFVSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19440			NAD(P)-binding Rossmann-fold s...		Potri.009G057600 [exp]	0	1	CCRL2,CCR.9
AT1G80530			Major facilitator superfamily ...		Potri.001G204700 [exp]	1.00	0.8440
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Potri.008G114300 [exp]	2.00	0.8188
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Potri.006G095500 [exp]	2.44	0.8172	UCP2.2
AT4G23500			Pectin lyase-like superfamily ...		Potri.001G100000 [exp]	3.74	0.7554
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Potri.008G049300 [exp]	5.29	0.7364
AT4G27190			NB-ARC domain-containing disea...		Potri.001G444500 [exp]	6.63	0.7493
AT3G03680			C2 calcium/lipid-binding plant...		Potri.013G066400 [exp]	9.38	0.7804
AT2G34750			RNA polymerase I specific tran...		Potri.005G098500 [exp]	9.94	0.7500
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Potri.002G258600 [exp]	11.66	0.7510
AT5G60450	ARF	ARF4	auxin response factor 4 (.1)		Potri.009G011800 [exp]	12.24	0.7562

Compare expression of checked genes

Potri.009G057600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.