Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CCR.6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19440 436 / 3e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 414 / 9e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 386 / 9e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09480 385 / 1e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 381 / 1e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 372 / 2e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 360 / 2e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G35420 278 / 3e-92 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G15950 266 / 3e-87 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT1G80820 257 / 6e-84 CCR2, ATCCR2 cinnamoyl coa reductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G052000 [exp] 446 / 4e-158 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057500 [exp] 443 / 3e-157 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 434 / 1e-153 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 434 / 1e-153 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G181400 [exp] 276 / 3e-91 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.008G138600 [exp] 272 / 9e-90 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.001G046400 [exp] 271 / 3e-89 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 271 / 5e-89 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.008G120200 [exp] 268 / 1e-88 AT1G68540 505 / 0.0 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009955 [exp] 423 / 5e-149 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 419 / 9e-148 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 417 / 8e-147 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 410 / 6e-144 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024130 [exp] 425 / 3e-142 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2) Lus10002302 [exp] 404 / 1e-141 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 404 / 2e-141 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 400 / 4e-140 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019732 [exp] 383 / 2e-133 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016389 [exp] 357 / 8e-124 AT1G09480 320 / 1e-109 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.009G057800.2 pacid=42771997 polypeptide=Potri.009G057800.2.p locus=Potri.009G057800 ID=Potri.009G057800.2.v4.1 annot-version=v4.1 ATGAGCTCTCTTGTCAGTTACCGGGCAGTCGCCACTGGCACAGAGAGGATGAGCAGAGGAGGGGACGGCAAGGTGGTGTGTGTCACGGGAGGGTCAGGAT ACATAGCTTCATGGCTAGTTAAGCTTTTGCTTCAACGTGGCTACACTGTCAAAACCACTGTCCGTGACCCAAATGATCCAAAGAAAACAGAACACTTGCT TGCACTTGAAGGAGCTAAAGAAAGACTTCATTTGTTCAAAGCTAATTTATTGGAAGAAGGGGCTTTTGATCCTATTGTTGATGGATGTGAAGGTGTTTTT CATACAGCTTCCCCTGTTTCTTTTTCACCCACTGACGACCCACAGGTTGACCTAATTGATCCTGCCTTGAAAGGAACACTAAATGTTCTTAGATCATGTG CAAAAGTTCATTCTATCAGGAGAGTGGTTTTAACCTCTTCAGCCGCAGCATGTATATATAGTGGAAAACCTCTGAACCATGATGTGGTTATTGACGAGAC CTGGTATTCAGATCCAGCTATTTGTAAGGAATTGAAGGCTTGGTATGCACTTTCAAAAACCTTAGCTGAGGAGGCTGCTTGGAATTTTGCAAAAGAGAAT GCTACTGACTTGGTTACAGTGCATCCATCATTTGTGATTGGCCCTCTTTTACAGCCAACTCTTAATTTAAGTGTGGAGATGATTCTCGACCTTGTCAATG GAGCTGAGACATACCCAAATGGATATTATAGGTGCATCGATGTTAGAGATGTTGCAAACGCACATATTCAAGCTTTTGAAATTCCTTCAGCTAGTGGCAG ATATGTTTTGACAGCATATGTCACAACCTTTTCTGAGGTTCTGAAGATCATCCGTGAAAACTATCCTACTTTGCGCCTTCCTGAAAAAAGTACAGAAAGC ATGTTCAAGCCATACCAGGTGTCCAAAGAGAAAGCAAAAACTTTGGGTATCAACTTCACTCCACTGGATTTGTCTCTCGTAGACACTATTGAGAGCTTGA AGGAGAAGGGCTTTCTCAAAATCTGA
AA sequence Show only first row Show all	>Potri.009G057800.2 pacid=42771997 polypeptide=Potri.009G057800.2.p locus=Potri.009G057800 ID=Potri.009G057800.2.v4.1 annot-version=v4.1 MSSLVSYRAVATGTERMSRGGDGKVVCVTGGSGYIASWLVKLLLQRGYTVKTTVRDPNDPKKTEHLLALEGAKERLHLFKANLLEEGAFDPIVDGCEGVF HTASPVSFSPTDDPQVDLIDPALKGTLNVLRSCAKVHSIRRVVLTSSAAACIYSGKPLNHDVVIDETWYSDPAICKELKAWYALSKTLAEEAAWNFAKEN ATDLVTVHPSFVIGPLLQPTLNLSVEMILDLVNGAETYPNGYYRCIDVRDVANAHIQAFEIPSASGRYVLTAYVTTFSEVLKIIRENYPTLRLPEKSTES MFKPYQVSKEKAKTLGINFTPLDLSLVDTIESLKEKGFLKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19440			NAD(P)-binding Rossmann-fold s...		Potri.009G057800 [exp]	0	1	Pt-CCR.6
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.019G118600 [exp]	2.23	0.9131
AT4G15510			Photosystem II reaction center...		Potri.013G006500 [exp]	4.00	0.9359
AT4G23900			Nucleoside diphosphate kinase ...		Potri.001G091001 [exp]	6.00	0.9017
					Potri.011G046112 [exp]	6.16	0.8884
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Potri.012G105300 [exp]	7.74	0.9292
AT4G03500			Ankyrin repeat family protein ...		Potri.019G107700 [exp]	16.09	0.8885
AT3G21690			MATE efflux family protein (.1...		Potri.011G002500 [exp]	21.21	0.8707
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Potri.003G182000 [exp]	21.28	0.8480
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Potri.002G229325 [exp]	22.24	0.8845
AT3G25920		RPL15	ribosomal protein L15 (.1)		Potri.008G121100 [exp]	22.27	0.9179

Compare expression of checked genes

Potri.009G057800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.