Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30370 627 / 0 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT1G06800 379 / 3e-126 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT2G30550 371 / 4e-123 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G51440 351 / 2e-115 alpha/beta-Hydrolases superfamily protein (.1) AT2G44810 247 / 2e-77 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) AT4G16820 246 / 5e-75 PLA-I{beta]2 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) AT4G18550 236 / 3e-72 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 234 / 2e-71 alpha/beta-Hydrolases superfamily protein (.1) AT1G05800 232 / 3e-70 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1) AT2G31100 226 / 1e-68 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G263200 [exp] 901 / 0 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 383 / 6e-128 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G218500 [exp] 381 / 3e-127 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G051900 [exp] 370 / 6e-123 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G081500 [exp] 273 / 2e-85 AT4G16820 558 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G153100 [exp] 271 / 2e-84 AT4G16820 575 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G150700 [exp] 253 / 2e-78 AT2G31690 491 / 7e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G101800 [exp] 249 / 3e-77 AT2G42690 531 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G231600 [exp] 248 / 2e-76 AT1G05800 524 / 0.0 DONGLE, alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038526 [exp] 623 / 0 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 592 / 0 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023280 [exp] 587 / 0 AT1G30370 537 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 583 / 0 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023281 [exp] 371 / 1e-124 AT1G30370 342 / 2e-113 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10040158 [exp] 275 / 4e-86 AT4G16820 573 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10004364 [exp] 271 / 2e-84 AT4G16820 587 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10010997 [exp] 270 / 9e-84 AT4G16820 551 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10017668 [exp] 250 / 1e-77 AT4G18550 420 / 1e-145 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10042914 [exp] 240 / 1e-73 AT2G44810 464 / 1e-163 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.009G057900.1 pacid=42772540 polypeptide=Potri.009G057900.1.p locus=Potri.009G057900 ID=Potri.009G057900.1.v4.1 annot-version=v4.1 ATGGAGATGTCACCATTTAGACAAGTCACAACAGAGGAAACAAGGTCAAGGAAAACCAGAAGAGCGTGGAAGTTGAAGCTTAATATCACTTGGCATGCTA TCAAGAAGGCAGTAAGTTACAACGTCAAGAAACGTCTCCACCTGCATCTTCATTTAAGCTGTGCAAGAAGCATGAGACGGCTTTCCACTAACCAAACCCA TCAGGAACTAGCTGTGAAGCCACATCAAGCTTCCAAACCAAAGCAAAAGGCTAGAAATCCCAGCAAAACACTAGCATCCCTCCTCCATGTGCCATATACA GCTTTGGATTTTGTAGACCGAGGAGATCACATGACTCCTACACTATCTCCCAAGCAGAGTATATCAGCAGTGTGGAAAGAAATCCATGGCTCAAGCAATT GGGAGACCCTTCTTGACCCTTTCCACCCGAGTCTTCGACGAGAAATTCTCAAATATGGAGAATTTGCTCAGGGCACATATGATGCCTTCGACTTTGATCC TTTATCAGATTTTTGTGGGAGTTGCAGGTATAACCGGCGTAAATTTTTTGAAACATTAGGCCTCACAAAGCATGGTTACAAGGTGAAAAAGTACATTTAT GCCTTGTCCCATGTAGATGTGCCTGAGTGGTTAAAGAGGTCATACGCTACGTGGAGCAAAGATTCCAACTGGATGGGTTATGTTGCTGTAAGCAGAAGAG AAGAATCACAGAGAATCGGCCGGAGAGACATAATGGTCGCATGGCGAGGCACTGTGTCACCATCAGAGTGGTTCAAAGACCTCACCACAAGTCTAGAACA TATTGACAACACAAATGTTAAAGTTCAAGAAGGGTTCCTCAGTGTTTACAAATCCAAGGATGAGTTGACAAGGTATAATAAGTTAAGTGCCTCTGAGCAG GTTATGCAAGAAGTGATGAGACTAGTGAATTTTTATAGAGGAAAGGGTGAAGAGGTTAGCTTGACAGTTACAGGGCATAGCTTAGGAGGTGCATTGGCAC TCCTCAATGCTTATGAGGCTGCAACTGCCATTCCTGATCTATTTGTTAGCGTCATTTCTTTTGGCGCACCAAGGGTTGGAAACATCGCCTTCAAGGAGAA GCTCAACGAATTAGGAGTCAAGACCTTACGTGTTGTAGTTAAGCAAGATATAGTCCCAAAACTACCAGGCCTGTTGAACAAAATGCTTAACAAGTTTCAT GGACTCACCGGGAAGTTGAATTGGGTTTATAGGCATGTAGGAACTCAATTGAAGCTTGATGCATTTATGTCACCCTACTTGAAGCCTGAATCTGACTTGT CAGGGTCTCATAATCTGGAGCTGTATCTTCACCTGATAGATGGATTTTTTAGCAAGAAATCCAAGTATCGATGGAATGCTAGGAGAGATTTGGCATTGGT GAACAAGGGTAGTGACATGTTGATAGAGGATCTGAAAATACCAGAGTTCTGGTACCAGTTTCCTTACAAGGGGCTCGTGTTGAACCAATACGGTAGATGG GTTAAACCTGGCAGGCTGCCTGAAGATATCCCTTCTCCACTGAGTATCGATACACCACCGAAACATGGTCGCCAATCTTAG
AA sequence Show only first row Show all	>Potri.009G057900.1 pacid=42772540 polypeptide=Potri.009G057900.1.p locus=Potri.009G057900 ID=Potri.009G057900.1.v4.1 annot-version=v4.1 MEMSPFRQVTTEETRSRKTRRAWKLKLNITWHAIKKAVSYNVKKRLHLHLHLSCARSMRRLSTNQTHQELAVKPHQASKPKQKARNPSKTLASLLHVPYT ALDFVDRGDHMTPTLSPKQSISAVWKEIHGSSNWETLLDPFHPSLRREILKYGEFAQGTYDAFDFDPLSDFCGSCRYNRRKFFETLGLTKHGYKVKKYIY ALSHVDVPEWLKRSYATWSKDSNWMGYVAVSRREESQRIGRRDIMVAWRGTVSPSEWFKDLTTSLEHIDNTNVKVQEGFLSVYKSKDELTRYNKLSASEQ VMQEVMRLVNFYRGKGEEVSLTVTGHSLGGALALLNAYEAATAIPDLFVSVISFGAPRVGNIAFKEKLNELGVKTLRVVVKQDIVPKLPGLLNKMLNKFH GLTGKLNWVYRHVGTQLKLDAFMSPYLKPESDLSGSHNLELYLHLIDGFFSKKSKYRWNARRDLALVNKGSDMLIEDLKIPEFWYQFPYKGLVLNQYGRW VKPGRLPEDIPSPLSIDTPPKHGRQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Potri.009G057900 [exp]	0	1
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Potri.002G183200 [exp]	3.46	0.9067
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Potri.001G316300 [exp]	3.87	0.8930
AT4G17350			Plant protein of unknown funct...		Potri.003G077900 [exp]	6.32	0.8368
AT5G01750			Protein of unknown function (D...		Potri.016G131600 [exp]	8.24	0.8943
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Potri.001G295500 [exp]	10.00	0.8811
AT1G29760			Putative adipose-regulatory pr...		Potri.003G025975 [exp]	11.66	0.8188
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Potri.002G070500 [exp]	12.80	0.8826
AT4G27745			Yippee family putative zinc-bi...		Potri.014G101600 [exp]	26.49	0.8802
AT3G62760		ATGSTF13	Glutathione S-transferase fami...		Potri.014G132200 [exp]	26.72	0.8727	Pt-ATGSTF13.1
AT4G13830		J20	DNAJ-like 20 (.1.2)		Potri.007G088900 [exp]	27.20	0.8693

Compare expression of checked genes

Potri.009G057900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.