Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52820 811 / 0 WD-40 repeat family protein / notchless protein, putative (.1) AT3G49660 127 / 4e-33 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 124 / 7e-32 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 108 / 4e-25 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT2G43770 104 / 1e-24 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 99 / 8e-22 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 98 / 2e-21 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 98 / 2e-21 TAF5 TBP-associated factor 5 (.1) AT5G16750 98 / 2e-21 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT1G71840 94 / 1e-20 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G051900 [exp] 135 / 8e-36 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 132 / 7e-35 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 119 / 7e-30 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 109 / 3e-26 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.019G096900 [exp] 107 / 1e-25 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G050100 [exp] 108 / 5e-25 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.005G144400 [exp] 105 / 3e-24 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.015G087200 [exp] 101 / 6e-23 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 100 / 4e-22 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039597 [exp] 894 / 0 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10029493 [exp] 894 / 0 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10014674 [exp] 138 / 7e-37 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 138 / 8e-37 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 124 / 1e-31 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 117 / 3e-29 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10024972 [exp] 110 / 1e-25 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10021059 [exp] 104 / 1e-23 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 103 / 2e-23 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10012230 [exp] 98 / 3e-22 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0072 [poplar] [flax] Ubiquitin PF08154 [poplar] [flax] NLE NLE (NUC135) domain
Representative CDS sequence Show only first row Show all	>Potri.009G058000.1 pacid=42772611 polypeptide=Potri.009G058000.1.p locus=Potri.009G058000 ID=Potri.009G058000.1.v4.1 annot-version=v4.1 ATGGAGGATGAAGCAGTGAACAATGTTATGTGCCAATTCACAGACCCAGAAGGGACGCCACTTGGAGCTCCTCTATATCTTCCTCAAAACGCTGGTCCAC AACAACTTCAACAAATCGTTAATAAGCTTCTTAACAATGAAGAGAAGTTACCGTATGCTTTTTACATATCGGATCAAGAGCTTGTTGTGCCACTTGAAAC TTACTTACAGAAAAACAAAGTTTCGGTGGAGAAGGTACTGGCGATTGTTTGTCAACCACAAGCTATTTTCCGAATTCGTCCAGTTAATCGTTGTTCAGCG ACTATTGCTGGTCATGCGGAAGCTGTACTTTCAGTTGCCTTTAGTCCCGATGGGCGGCAGCTGGCCAGTGGCTCTGGGGATACCACTGTTCGTCTATGGG ACCTTAATACCCAGACACCGATGTTTACCTGTACAGGACATAAGAATTGGGTTCTTTGCATTGCATGGTCACCAGATGGTAAGCATCTGGTGAGTGGGAG CAAGGCTGGAGAACTTCAGTGTTGGGATCCTCAGACGGGAAAGCCATCAGGGAATCAGCTTGTGGGCCACAAGAAATGGATTACTGGCATCTCTTGGGAA CCAGTCCATTTGAATGCTCCTTGCCGTCGCTTTGTTAGTGCTAGCAAAGATGGAGATGCACGCATATGGGACATATCACTAAGAAAATCTGTTATTTGTC TTAGTGGCCACACACTTGCAATAACTTGTGTAAAATGGGGTGGAGATGGAGTAATTTATACTGGCTCCCAGGATTGTACCATTAAAGTGTGGGAAACATC ACAAGGGAAGCTTATTCGTGAATTGAAGGGTCATGGGCATTGGGTTAACTCTCTCGCATTGAGCACTGAGTATGTTCTTCGCACAGGAGCTTTTGATCAT ACAGGAAAAACACATTCTTCTCCAGAGGAAATGAAGAAGGTTGCTCTGGAAAGGTACAATAAAATGAAAGGCAATGCTCCTGAAAGACTAGTTTCAGGTT CTGATGATTTTACCATGTTCCTCTGGGAACCCGCTGTCAGCAAACACCCTAAAACTCGCATGACAGGTCATCAACAGCTTGTAAATCATGTATACTTCTC ACCTGATGGGAATTGGGTAGCTAGTGCATCATTTGATAAATCTGTGAAGCTATGGAATGGCATTACTGGGAAATTTGTTGCTGCTTTTCGTGGCCATGTC GGACCTGTTTATCAGATCAGCTGGTCCGCAGACAGTAGGCTTCTTTTAAGTGGGAGCAAAGACTCTACGCTGAAGATTTGGGATATACGAACACAGAAAT TAAAGCAAGATCTTCCTGGCCATGCAGATGAGGTATTTGCCGTTGATTGGAGTCCAGATGGTGAGAAAGTAGCTTCTGGTGGTAAGGATAGAGTATTGAA ATTATGGATGGGCTAA
AA sequence Show only first row Show all	>Potri.009G058000.1 pacid=42772611 polypeptide=Potri.009G058000.1.p locus=Potri.009G058000 ID=Potri.009G058000.1.v4.1 annot-version=v4.1 MEDEAVNNVMCQFTDPEGTPLGAPLYLPQNAGPQQLQQIVNKLLNNEEKLPYAFYISDQELVVPLETYLQKNKVSVEKVLAIVCQPQAIFRIRPVNRCSA TIAGHAEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFTCTGHKNWVLCIAWSPDGKHLVSGSKAGELQCWDPQTGKPSGNQLVGHKKWITGISWE PVHLNAPCRRFVSASKDGDARIWDISLRKSVICLSGHTLAITCVKWGGDGVIYTGSQDCTIKVWETSQGKLIRELKGHGHWVNSLALSTEYVLRTGAFDH TGKTHSSPEEMKKVALERYNKMKGNAPERLVSGSDDFTMFLWEPAVSKHPKTRMTGHQQLVNHVYFSPDGNWVASASFDKSVKLWNGITGKFVAAFRGHV GPVYQISWSADSRLLLSGSKDSTLKIWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52820			WD-40 repeat family protein / ...		Potri.009G058000 [exp]	0	1
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.011G032400 [exp]	1.41	0.8864
AT5G23300		PYRD	pyrimidine d (.1)		Potri.005G089700 [exp]	2.82	0.8499
AT1G20370			Pseudouridine synthase family ...		Potri.005G247000 [exp]	4.47	0.8396
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Potri.003G201100 [exp]	4.89	0.8643	Pt-IMP4.2
AT4G37090			unknown protein		Potri.007G034600 [exp]	5.09	0.8661
AT3G13700			RNA-binding (RRM/RBD/RNP motif...		Potri.003G035000 [exp]	7.34	0.8038
AT2G39795			Mitochondrial glycoprotein fam...		Potri.010G198600 [exp]	7.48	0.8331
AT5G64650			Ribosomal protein L17 family p...		Potri.007G107100 [exp]	7.48	0.8359
AT5G02050			Mitochondrial glycoprotein fam...		Potri.006G090700 [exp]	11.22	0.8279	Pt-SDH4.3
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Potri.002G204900 [exp]	12.96	0.8382

Compare expression of checked genes

Potri.009G058000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.