Plant FIBer expression Database

Potri.009G058100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13690 1208 / 0 NAGLU, CYL1 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G075932
[exp]
1036 / 0 AT5G13690 1020 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039598
[exp]
1273 / 0 AT5G13690 1173 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1)
Lus10029494
[exp]
1270 / 0 AT5G13690 1174 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1)
Lus10043468
[exp]
1028 / 0 AT5G13690 997 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1)
Lus10034116
[exp]
970 / 0 AT5G13690 933 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0058 Glyco_hydro_tim PF05089 NAGLU Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain
CL0546 Hexosaminidase PF12971 NAGLU_N Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain
CL0546 PF12972 NAGLU_C Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain
Representative CDS sequence
>Potri.009G058100.1 pacid=42772040 polypeptide=Potri.009G058100.1.p locus=Potri.009G058100 ID=Potri.009G058100.1.v4.1 annot-version=v4.1
ATGTCCACTCTCAAGACTCTTATTTTCACTACAACACTACTGATACTAACACTGTCATCAGTAGCTTTGTCAAGACCAGAAGCTATTGATTCTTTACTTA
AACGTTTGGATTCGAAGCGGGCATCTTCATCAGACCAAGAATCAGCAGCTAAAGCTGTCTTGAAAAGATTGCTTCCATCCCATATACACAGCTTTTTGTT
CAAGATTGTATCCAAGGATGTTTGTGGGGGGCACAGTTGCTTTTTGATAAACAATTACTACAAGGAATCGAGCGGGAATGGACCTGAGATAAGTATTAAA
GGCACCACAGCAGTAGAGATTGCATCCGGCCTCCATTGGTATTTAAAGTACTGGTGTGGGGCTCATGTTTCATGGGACAAGACTGGTGGTGTTCAGATAG
CCTCGATTCCAAAGCCAGGATCACTTCCTCATGTAAAGGATAAGGGTGTAATGATCCAGCGACCAGTTCCATGGAACTATTACCAAAACGTCGTTACATC
CAGTTATTCTTATGTTTGGTGGAATTGGGAAAGGTGGGAGAAAGAATTAGATTGGATGGCTCTTCAGGGGATTAATCTGCCTTTGGCATTCACTGGACAA
GAAGCCATTTGGCAAAAGGTTTTCATGAATCTTAATATTACCACAGAAGATTTGAATGATTTCTTTGGTGGACCTGCTTTCCTTGCATGGGCTCGTATGG
GAAATTTACATGGTTGGGGTGGACCTTTGTCGCAAAATTGGTTAGATCAACAATTGTGTCTGCAGAAACAGATACTGTCTCGGATGCTAGAGCTAGGCAT
GACTCCAGTGCTGCCATCATTCTCTGGAAATGTTCCAGCTGCTTTGAAGAAGATTTTTCCTTCAGCAAATATAACGAGACTTGGAGACTGGAACACAGTG
GATAAAAATCCTCGGTGGTGCTGCACTTACCTTCTTAATCCTTCTGATCCCTTGTTTGTTGAAATTGGGGAGGCTTTTATAAGACAACAGGTTAAGGAAT
ATGGGGATGTGACGGACATCTACAACTGTGATACTTTCAACGAGAATTCCCCACCTACAAGTGATCCAGCTTATATCTCTTCACTTGGTGCTGCTGTATA
CAAAGCGATGTCAAGAGGTGATAAAGATGCTGTGTGGTTAATGCAAGGCTGGCTCTTCTACTCAGACTCTGCTTTCTGGAAGCCACCTCAAATGCAGGCT
CTTTTACATTCTGTTCCATTTGGAAAAATGATAGTTTTAGATCTGTTTGCTGAAGCCAAACCGATATGGAAGAATTCCTCACAATTTTATGGCACTCCTT
ATGTTTGGTGTCTGTTGCATAATTTTGGGGGAAATATCGAAATGTATGGCATATTGGACGCAATATCTTCAGGTCCAGTTGATGCCCGCATCATTGAAAA
TTCAACCATGGTTGGTGTTGGCATGTGCATGGAAGGAATAGAGCACAATCCGGTTGTTTATGAACTAATGTCTGAAATGGCATTCCGCAGTGGAAAACCT
CAAGTTTTGGAATGGTTGAAGACCTATTCCCGTAGACGATATGGTAAAGCAGTTCGTCAAGTTGTGGCAGCTTGGGATATTCTTTACCACACAATTTACA
ATTGTACAGATGGAATTGCTGACCATAACACAGACTTCATTGTAAAGTTTCCTGACTGGGATCCATCGCTGCATTCTGGATCCAACATATCTGAACAAGA
CAATATGCGCATTCTCCTCACATCATCTGGAACCAGAAGATTTTTATTCCAAGAGACAAGTTCTGATTTCCCTGAGGCACATTTATGGTATTCTACACAG
GAGGTGATCCAAGCTTTATGGCTATTCCTTGATGCTGGAAATGATCTTGCCGGGAGCCCCACGTATAGGTATGACCTGGTTGACTTAACACGACAAGTAC
TGTCAAAGCTAGCAAACCAAGTATATAGGGATGCTATGATTGCTTTTCGAAGGAAAGATGCTAGAGCTTTGAATCTTCATGGACAGAAATTTTTGCAGAT
CATAAAGGATATCGATGTGCTTCTTGCTTCTGATGATAACTTTCTACTTGGAACATGGCTTGAAAGTGCAAAAAAGCTGGCTGTTGATCCAAACGATATG
AAGCTGTATGAATGGAATGCAAGAACACAAGTGACAATGTGGTATGATACGACAAAAACCAACCAGAGCCAGCTTCATGATTATGCTAACAAATTTTGGA
GCGGGCTACTAGAAGACTATTATCTTCCACGAGCTTCAACCTATTTTGGTCATTTGATGAAAAGCTTGGAAGAAAATAAAAACTTCAAGTTGACAGAGTG
GAGAAAAGAATGGATAGCCTTCTCAAACAAATGGCAAGCGGATACGAAGATTTATCCTGTGAAGGCCAAGGGAGATGCTCTAGCTATTGCTAAAGCATTG
TACAGAAAATACTTTGGTTGA
AA sequence
>Potri.009G058100.1 pacid=42772040 polypeptide=Potri.009G058100.1.p locus=Potri.009G058100 ID=Potri.009G058100.1.v4.1 annot-version=v4.1
MSTLKTLIFTTTLLILTLSSVALSRPEAIDSLLKRLDSKRASSSDQESAAKAVLKRLLPSHIHSFLFKIVSKDVCGGHSCFLINNYYKESSGNGPEISIK
GTTAVEIASGLHWYLKYWCGAHVSWDKTGGVQIASIPKPGSLPHVKDKGVMIQRPVPWNYYQNVVTSSYSYVWWNWERWEKELDWMALQGINLPLAFTGQ
EAIWQKVFMNLNITTEDLNDFFGGPAFLAWARMGNLHGWGGPLSQNWLDQQLCLQKQILSRMLELGMTPVLPSFSGNVPAALKKIFPSANITRLGDWNTV
DKNPRWCCTYLLNPSDPLFVEIGEAFIRQQVKEYGDVTDIYNCDTFNENSPPTSDPAYISSLGAAVYKAMSRGDKDAVWLMQGWLFYSDSAFWKPPQMQA
LLHSVPFGKMIVLDLFAEAKPIWKNSSQFYGTPYVWCLLHNFGGNIEMYGILDAISSGPVDARIIENSTMVGVGMCMEGIEHNPVVYELMSEMAFRSGKP
QVLEWLKTYSRRRYGKAVRQVVAAWDILYHTIYNCTDGIADHNTDFIVKFPDWDPSLHSGSNISEQDNMRILLTSSGTRRFLFQETSSDFPEAHLWYSTQ
EVIQALWLFLDAGNDLAGSPTYRYDLVDLTRQVLSKLANQVYRDAMIAFRRKDARALNLHGQKFLQIIKDIDVLLASDDNFLLGTWLESAKKLAVDPNDM
KLYEWNARTQVTMWYDTTKTNQSQLHDYANKFWSGLLEDYYLPRASTYFGHLMKSLEENKNFKLTEWRKEWIAFSNKWQADTKIYPVKAKGDALAIAKAL
YRKYFG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G13690 NAGLU, CYL1 N-ACETYL-GLUCOSAMINIDASE, CYCL... Potri.009G058100
[exp]
0 1
AT2G07180 Protein kinase superfamily pro... Potri.018G149100
[exp]
3.16 0.6341
AT3G47570 Leucine-rich repeat protein ki... Potri.004G069001
[exp]
9.38 0.6982
AT1G07110 FKFBP, ATF2KP, ... "fructose-2,6-bisphosphatase",... Potri.009G073800
[exp]
13.07 0.6742
Potri.005G167800
[exp]
16.79 0.6598
AT2G45850 AT-hook AT hook motif DNA-binding fami... Potri.014G082100
[exp]
20.00 0.6629
AT4G13830 J20 DNAJ-like 20 (.1.2) Potri.001G319100
[exp]
28.24 0.5890 Pt-DNAJ.2
Potri.002G093800
[exp]
42.13 0.6081
AT5G61060 HDA5, HDA05, AT... histone deacetylase 5 (.1.2) Potri.004G092900
[exp]
43.01 0.5736
Potri.008G068601
[exp]
46.58 0.6307
AT4G16150 CAMTA calmodulin binding;transcripti... Potri.008G107900
[exp]
48.28 0.5914

Potri.009G058100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.