Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13700 755 / 0 ATPAO1, APAO polyamine oxidase 1 (.1) AT1G65840 136 / 8e-35 ATPAO4 polyamine oxidase 4 (.1) AT2G43020 132 / 1e-33 ATPAO2 polyamine oxidase 2 (.1) AT3G59050 127 / 1e-31 ATPAO3 polyamine oxidase 3 (.1) AT1G62830 119 / 2e-28 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT3G10390 108 / 6e-25 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT4G16310 102 / 2e-22 LDL3 LSD1-like 3 (.1) AT3G13682 95 / 2e-20 LDL2 LSD1-like2 (.1) AT4G29720 71 / 5e-13 ATPAO5 polyamine oxidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G263400 [exp] 930 / 0 AT5G13700 734 / 0.0 polyamine oxidase 1 (.1) Potri.012G079500 [exp] 411 / 8e-140 AT5G13700 400 / 7e-136 polyamine oxidase 1 (.1) Potri.015G074600 [exp] 404 / 5e-137 AT5G13700 395 / 5e-134 polyamine oxidase 1 (.1) Potri.002G055300 [exp] 125 / 6e-31 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1) Potri.017G144001 [exp] 125 / 7e-31 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.004G075800 [exp] 123 / 3e-30 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.005G207300 [exp] 119 / 5e-29 AT2G43020 820 / 0.0 polyamine oxidase 2 (.1) Potri.002G013100 [exp] 119 / 2e-28 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Potri.011G127600 [exp] 110 / 2e-25 AT3G13682 959 / 0.0 LSD1-like2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039599 [exp] 791 / 0 AT5G13700 693 / 0.0 polyamine oxidase 1 (.1) Lus10029495 [exp] 655 / 0 AT5G13700 587 / 0.0 polyamine oxidase 1 (.1) Lus10019725 [exp] 364 / 2e-121 AT5G13700 365 / 2e-122 polyamine oxidase 1 (.1) Lus10041898 [exp] 363 / 2e-118 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1) Lus10042127 [exp] 328 / 4e-108 AT5G13700 320 / 5e-105 polyamine oxidase 1 (.1) Lus10042168 [exp] 327 / 3e-107 AT5G13700 337 / 4e-111 polyamine oxidase 1 (.1) Lus10020726 [exp] 129 / 4e-32 AT2G43020 794 / 0.0 polyamine oxidase 2 (.1) Lus10029804 [exp] 127 / 9e-32 AT2G43020 790 / 0.0 polyamine oxidase 2 (.1) Lus10005021 [exp] 120 / 2e-29 AT2G43020 720 / 0.0 polyamine oxidase 2 (.1) Lus10015996 [exp] 118 / 7e-28 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01593 [poplar] [flax] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.009G058200.1 pacid=42772310 polypeptide=Potri.009G058200.1.p locus=Potri.009G058200 ID=Potri.009G058200.1.v4.1 annot-version=v4.1 ATGGATTCCCCTTCTCGCTCCTCCGTCATCATCATCGGCGCTGGTGTCTCCGGTATATCTGCGGGAAAGGTATTGGCGGAGAATGGAATAGAGGACATGA TAATTTTAGAAGCTTCAGACCGTATCGGTGGTAGGATCCGAAAGGAGAATTTCGGTGGCGTTTCGGCTGAGCTTGGAGCCGGTTGGATCGCCGGAGTTGG TGGTAAAGAATCCAACCCTGTTTGGGAACTTGCTTCTCAATCTGGCCTCCGCACTTGTTTCTCTGATTATAGCAATGCTCGCTATAATATCTATGATCGC AGTGGGAAAATATTTCCCAGTGGAGTGGCGGCAGACTCTTACAAGAAGGCGGTGGACTCAGCAATTGAGAAGCTGAGGAGTCTAGAAGCAAACCTTGACG GTGAAGTTAGTGAACAACCTTGTTCACCAAAGACGCCCATCGAGCTTGCCATTGATTTCATCCTTCATGACTTTGAGATGGCAGAGGTAGAGCCAATATC AACATATGTAGATTTTGGAGAAAGAGAGTTTCTGGTAGCAGATGACAGAGGATATGAGCATTTGCTATACAAAATGGCTGAGAATTTTCTCTTTACCTCC GAGGGCAAAATCTTGGACAACCGTCTCAAACTCAACAAGGTTGTCAGGGAGTTGCAGCACTCGAGAAACGGCGTTGTTGTGAAAACGGAGGATGGCTGTG TCTACGAAGCCAATTATGTGATTTTGTCAGCTAGTATCGGTGTTCTCCAAAGTGACCTCATTTCCTTCAGGCCTCCCTTGCCCAGGTGGAAAACAGAGGC CATAGAGAAATGTGATGTGATGATATATACAAAGATTTTCCTCAAGTTCCCATATAAATTTTGGCCATGTGGTCCCGGAAAAGAGTTCTTCATCTATGCT CACGAGCGAAGGGGATACTACACCTTCTGGCAGCACATGGAAAATGCATACCCTGGTTCGAATATTTTGGTCGTGACGCTGACGAATGGGGAATCGAAAC GCGTTGAAGCTCAATCTGACGAGGAGACACTGGAGGAAGCTATGGGGGTCCTTAGAGACATGTTTGGACCCAATATACCTAATGCCACTGATATACTTGT GCCCCGCTGGTGGAACAACAGATTCCAGCGTGGCAGCTACAGCAACTACCCCATCATTTCAGATAACCAAGATGTTCATTATATTAAGGCCCCGGTAGGA CGCATCTTCTTCACTGGTGAACACACTAGTGAACGATTTAGTGGTTATGTCCATGGCGGATATCTTGCGGGGATTGACACGAGCAAATCACTACTGGAAG AAATGAGAAAACAGAAGGAAAGAAAAAGTGAGAGTCAAGCATTTTTGTTAGAGCCCTTGCTGGCATTGACAGGATCACTAACACTCACACAGACAGAAGC AGTCCCAAGTCTACACAAATGTGACATTCCTACACAACTCTACCTTGGTGGCAAGGTTGGCCTTCAAGAAGCGATATTATGA
AA sequence Show only first row Show all	>Potri.009G058200.1 pacid=42772310 polypeptide=Potri.009G058200.1.p locus=Potri.009G058200 ID=Potri.009G058200.1.v4.1 annot-version=v4.1 MDSPSRSSVIIIGAGVSGISAGKVLAENGIEDMIILEASDRIGGRIRKENFGGVSAELGAGWIAGVGGKESNPVWELASQSGLRTCFSDYSNARYNIYDR SGKIFPSGVAADSYKKAVDSAIEKLRSLEANLDGEVSEQPCSPKTPIELAIDFILHDFEMAEVEPISTYVDFGEREFLVADDRGYEHLLYKMAENFLFTS EGKILDNRLKLNKVVRELQHSRNGVVVKTEDGCVYEANYVILSASIGVLQSDLISFRPPLPRWKTEAIEKCDVMIYTKIFLKFPYKFWPCGPGKEFFIYA HERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQSDEETLEEAMGVLRDMFGPNIPNATDILVPRWWNNRFQRGSYSNYPIISDNQDVHYIKAPVG RIFFTGEHTSERFSGYVHGGYLAGIDTSKSLLEEMRKQKERKSESQAFLLEPLLALTGSLTLTQTEAVPSLHKCDIPTQLYLGGKVGLQEAIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Potri.009G058200 [exp]	0	1
AT2G26040		RCAR14, PYL2	regulatory components of ABA r...		Potri.018G054400 [exp]	5.47	0.9120
AT5G54290		CcdA	cytochrome c biogenesis protei...		Potri.001G406700 [exp]	7.81	0.9145
AT1G34300			lectin protein kinase family p...		Potri.013G115800 [exp]	10.19	0.9125
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.004G028000 [exp]	12.16	0.8734	ARK3.1
AT2G21080			unknown protein		Potri.006G279200 [exp]	15.19	0.8929
AT1G70170		MMP	matrix metalloproteinase (.1)		Potri.019G073800 [exp]	15.49	0.8975
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Potri.013G095500 [exp]	16.73	0.9115
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048900 [exp]	22.62	0.8789
AT5G20190			Tetratricopeptide repeat (TPR)...		Potri.006G068200 [exp]	22.71	0.9057
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.010G068100 [exp]	24.00	0.8836

Compare expression of checked genes

Potri.009G058200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.