Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53170 619 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48730 381 / 5e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06430 331 / 1e-108 AtPPR2, EMB2750 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 171 / 5e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39620 163 / 1e-44 ATPPR5, EMB2453 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G74850 162 / 8e-43 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT2G35130 155 / 2e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G41720 151 / 2e-39 EMB2654 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G18110 150 / 9e-39 EMB1270 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G16010 149 / 9e-39 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G243600 [exp] 421 / 2e-143 AT5G48730 691 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G153900 [exp] 343 / 1e-113 AT3G06430 717 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G098700 [exp] 325 / 2e-106 AT3G06430 692 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G069100 [exp] 167 / 2e-44 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.006G049900 [exp] 166 / 3e-44 AT2G41720 1169 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.009G092100 [exp] 165 / 9e-44 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G123900 [exp] 159 / 1e-41 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G082400 [exp] 154 / 3e-41 AT4G39620 625 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.017G036400 [exp] 157 / 5e-41 AT3G18110 1949 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024893 [exp] 614 / 0 AT3G53170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022787 [exp] 411 / 2e-139 AT5G48730 687 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011849 [exp] 410 / 3e-139 AT5G48730 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000862 [exp] 324 / 8e-106 AT3G06430 644 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028683 [exp] 311 / 1e-100 AT3G06430 640 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027552 [exp] 307 / 1e-99 AT3G06430 501 / 1e-175 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039311 [exp] 212 / 8e-66 AT3G06430 358 / 5e-123 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033127 [exp] 162 / 7e-43 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10013894 [exp] 157 / 5e-41 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 155 / 1e-40 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.009G058300.1 pacid=42772189 polypeptide=Potri.009G058300.1.p locus=Potri.009G058300 ID=Potri.009G058300.1.v4.1 annot-version=v4.1 ATGCAGCCACAACCCCTTTCCTTCACTAACATGAGCTGGTCACTCTCAATCTCTACCCCTCCTTCAAAAAACCTCTTTGCAGGATCCAATGGAAACCAAG ACCCACAATTTCTTACTATCCAATCCTCTAAATGGTGCCCCGACCCAACTTCAACTGGGCTCCAAAGACAATCCAAGAAGGAGTTGTCTAGGATTCTAAG AACTGAAGCTGCTATAAAAGCTATTGAACAAAAAGCCAACTCCAAGAAATATAATAACCTTTGGCCTAAAGCTGTTTTAGAAGCTCTTGACGACGCTATA AAAGAAAACCAATGGGAATCTGCTCTTAAGATTTTTGAACTTCTTCGTAAGCAACATTGGTACGAGCCGAGAACCAAAACATACACCAAGTTGTTGATGA TGCTTGGCAAGTGCAGGCAACCTGAGGAGGGCAGCTTGCTTTTTGAGGTCATGCTGTCTGATGGCCTCAAACCTACAATTGATGTTTATACTGCTCTTGT GAGTGCTTATGGAAAAAGTGGTCAACTTGACAAGGCGTTTTCTATTGTTGTTGAAATGAAAGCAATCTCTGAATGCAAACCAGATGTGTATACATATTCC ATACTTATAAACTGTTGCATTAAACTCCATCGTTTTGAACTTATTCGAGGAATTCTTGCTGAGATGTCATATCTAGGAATTGAATGCAGCTCTGTTACGT ACAACACTATCATCGATGGATACGGTAAGGCTAAAATGTTTGAAGAAATGGAGAACACATTGACAGATATGATTGAAAGCGGCAGCTCTGTTCCAGATCT TTTCACATTTAATTCCATCATTGGGGCTTATGGGAGCAGTGGGCGGATAGACAAGATGGAGAAGTGGTACACTGAATTTCAGTTAATGGGTCTAAGGCAA GATATTAAGACGTTCAATATCCTGATCAGATCATATGGGAAAGCAGGCATGTATGGCAAGATGAGGTCTGTTTTGGAATTCATGGAGAACAGGTTCTTTT CTCCATCAATTGTTACTCATAATATTATCATTGAGACATTTGGAAAGGCCGGGGATATTGAGACCATGGAGGAATACTTCAGCAAAATGAAACATCTAGG AATTAAGCCTAACACTGTCACTTACTGTTCTCTTGTTAGTGCTTACAGTAAAGCTGGGCATATAATGAAGGTTGATTCAATTCTGAGGCAGGTGGAGAAC TCTGATGTGATACTAGATACCCCATTCTTCAACTGCGTCATCAGTGCCTATGGTCGAGCAGGTGATATAGAAAAGATGTCTGAGTTGTTTCTGGGAATGG AAGGGAGAAAATGCAAGCCGGAGAGCATCACCTTTGCTACCATGATTCAAGCCTACAACGCGCAAGGCATGATTGAAGCTGCACAAGGCATGGAGAATAT GATGATTGCAACCAGGAAGAATTCAGGTACTAGGTTGATTGGAGCCTAG
AA sequence Show only first row Show all	>Potri.009G058300.1 pacid=42772189 polypeptide=Potri.009G058300.1.p locus=Potri.009G058300 ID=Potri.009G058300.1.v4.1 annot-version=v4.1 MQPQPLSFTNMSWSLSISTPPSKNLFAGSNGNQDPQFLTIQSSKWCPDPTSTGLQRQSKKELSRILRTEAAIKAIEQKANSKKYNNLWPKAVLEALDDAI KENQWESALKIFELLRKQHWYEPRTKTYTKLLMMLGKCRQPEEGSLLFEVMLSDGLKPTIDVYTALVSAYGKSGQLDKAFSIVVEMKAISECKPDVYTYS ILINCCIKLHRFELIRGILAEMSYLGIECSSVTYNTIIDGYGKAKMFEEMENTLTDMIESGSSVPDLFTFNSIIGAYGSSGRIDKMEKWYTEFQLMGLRQ DIKTFNILIRSYGKAGMYGKMRSVLEFMENRFFSPSIVTHNIIIETFGKAGDIETMEEYFSKMKHLGIKPNTVTYCSLVSAYSKAGHIMKVDSILRQVEN SDVILDTPFFNCVISAYGRAGDIEKMSELFLGMEGRKCKPESITFATMIQAYNAQGMIEAAQGMENMMIATRKNSGTRLIGA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53170			Tetratricopeptide repeat (TPR)...		Potri.009G058300 [exp]	0	1
AT5G27730			Protein of unknown function (D...		Potri.013G016900 [exp]	2.00	0.9286
AT5G08520	MYB		Duplicated homeodomain-like su...		Potri.007G076200 [exp]	3.16	0.9038
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Potri.014G005000 [exp]	6.00	0.8994
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Potri.001G421300 [exp]	7.07	0.8819
AT1G06510			unknown protein		Potri.005G203100 [exp]	8.36	0.9011
AT4G01030			pentatricopeptide (PPR) repeat...		Potri.014G097000 [exp]	10.67	0.9028
AT3G51290			Protein of unknown function (D...		Potri.009G137500 [exp]	10.95	0.8859
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Potri.009G100900 [exp]	12.24	0.8959
AT5G07900			Mitochondrial transcription te...		Potri.010G022700 [exp]	12.32	0.8862
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Potri.006G160300 [exp]	13.56	0.9052

Compare expression of checked genes

Potri.009G058300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.