Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TOP2.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23890 1689 / 0 ATTOPII, TOPII topoisomerase II (.1.2) AT5G04130 114 / 1e-25 GYRB2 DNA GYRASE B2 (.1.2) AT3G10270 108 / 2e-23 GYRB1 DNA GYRASE B1 (.1) AT2G13720 65 / 3e-11 DNA topoisomerase (ATP-hydrolyzing)s;ATP binding;DNA binding (.1) AT3G10690 62 / 4e-09 GYRA DNA GYRASE A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G264000 [exp] 2472 / 0 AT3G23890 1716 / 0.0 topoisomerase II (.1.2) Potri.016G036200 [exp] 124 / 1e-28 AT5G04130 1080 / 0.0 DNA GYRASE B2 (.1.2) Potri.006G039400 [exp] 123 / 2e-28 AT5G04130 1025 / 0.0 DNA GYRASE B2 (.1.2) Potri.010G247000 [exp] 76 / 2e-13 AT3G10690 1366 / 0.0 DNA GYRASE A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019720 [exp] 1874 / 0 AT3G23890 1685 / 0.0 topoisomerase II (.1.2) Lus10016397 [exp] 1806 / 0 AT3G23890 1682 / 0.0 topoisomerase II (.1.2) Lus10010428 [exp] 115 / 1e-25 AT5G04130 1080 / 0.0 DNA GYRASE B2 (.1.2) Lus10012114 [exp] 106 / 5e-23 AT5G04130 1060 / 0.0 DNA GYRASE B2 (.1.2) Lus10028879 [exp] 75 / 5e-13 AT3G10690 1344 / 0.0 DNA GYRASE A (.1) Lus10008940 [exp] 47 / 0.0002 AT3G10690 1053 / 0.0 DNA GYRASE A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF00204 [poplar] [flax] DNA_gyraseB DNA gyrase B CL0329 [poplar] [flax] PF00521 [poplar] [flax] DNA_topoisoIV DNA gyrase/topoisomerase IV, subunit A CL0413 [poplar] [flax] Toprim-like PF01751 [poplar] [flax] Toprim Toprim domain CL0025 [poplar] [flax] His_Kinase_A PF02518 [poplar] [flax] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0025 [poplar] [flax] PF16898 [poplar] [flax] TOPRIM_C C-terminal associated domain of TOPRIM
Representative CDS sequence Show only first row Show all	>Potri.009G058900.1 pacid=42771617 polypeptide=Potri.009G058900.1.p locus=Potri.009G058900 ID=Potri.009G058900.1.v4.1 annot-version=v4.1 ATGGCGGCAGAGACCAAGAAAATCCCATTATCAACAAGCGACAGCTTAAATATGAACCAGGAAAAGACAATCGAAGAAACCTACCAGAAAAAGTCCCAAT TGGAGCACATTCTTCTGCGACCCGACACCTACATCGGGTCAATCGAGAAGCACGCGCAGATCCTCTGGGTTTTCGAGAATGATAAAATGGTCCACCGATC GGTTACTTATGTACCGGGACTTTATAAAATCTTTGATGAAATATTGGTGAATGCAGCGGATAATAAGCAAAGAGACCCGAAAATGGATTCTTTGAAGGTT GTGATTGATGTGGAGAATAATTTGGTTAGTGTTTATAACAATGGAGATGGGGTTCCGGTGGATATGCACAAGGAGGAAGGAGTTTATGTGCCCGAACTGA TTTTTGGGCATTTGTTGACTAGTAGTAATTATGATGATACGATGAAGAAGACTACTGGTGGGAGAAATGGATATGGTGCTAAGCTTACGAATATTTTTTC GACCGAGTTTGTGATTGAGACGGCTGATGGGAAAAGGAAAAAGAAGTATAAGCAGGTTTTCTCTAACAACATGGGGAAAAGATCTGAGCCGATAATAACT AAGTGCAAGGAGAGTGAGAATTGGACCAAGGTGACATTTAAGCCCGATTTGGCTAAGTTTAGCATGACTCACCTGGAAGAAGATGTGGTAGCTCTGATGA AAAAAAGGGTGGTTGACATGGCTGGTTGCCTTGGAAAGACTGTCAAGGTTGAGCTCAATGGAAGTCGTGTTCCTGTCAAATCATTTCAAGATTACGTTAA CATGTACTTGAATTCTGCCGCTGAGTCTGGCTCAGAACGCCCAAAATGTTTCTACGATAAAGTTGGTGAGAGGTGGGAGGTTTGTGTGAGCCTTACTGAA GGTCAATTCCAGCAGGCCAGCTTCGTTAATAGCATTGCCACCATCAAGGGTGGAACTCATGTTGATTACGTCACTAATCAGATCACTAACTATGTGATGA ATGCTGTTAATAAGAAGCACAAGAATGGCAACATCAAAGCCCATAATGTGAAGAACTATTTGTGGGTTTTTGTCAATTGCCTTATTGATAACCCTGCTTT TGATTCTCAAACAAAAGAAACTTTGACACTTCGCCAGAGCAGTTTTGGATCAAAATGTGAACTTTCTGAAGACTTCTTGAAGAAAGTGGCAAAGTCTGAC ATCGTTGACAACCTCCTTTCGTGGGCAAAATTCAAGGAAAACAAAGAGCTTAAGAAAACTGACGGAACAAAGACAGCAAAGGTTAATGTGCCAAAGCTTG AGGATGCTAACGAGGCTGGAGGGAGGTATTCTGAAAAATGCACTTTGATATTGACAGAAGGAGATTCGGCAAAAGCTCTGGCAATTGCTGGTGTGGCTGG GCTGTCTCAGATGGAACGGAACTTCTACGGGGTATTCCCTTTGAGAGGTAAATTGCTCAATGTGCGAGAAGCCACGTCTAAACAGCTCAAAGAGAATAAG GAAATTGAGAGCATCAAGAAGATTCTTGGGTTACAGCATGATAAACAGTACAGCAATGTCAAGTCTTTGAGATACGGTCATCTGATGATAATGACAGATC AGGATCATGATGGGTCTCACATTAAAGGCCTACTGATCAATTTCATTCATTCATTCTGGCCATCATTACTGAAAGTCCCATCTTTCTTGGTTGAGTTTAT AACTCCTATTGTCAAGGCTACTCATAGAAATGGAACAGTTCTATCCTTTTATTCCATGCCGGAGTATGAATACTGGAAGGAAAGTTTGAGTGGGAATGCA AGTGGCTGGTCCATCAAATACTATAAGGGGTTGGGAACAAGTACATCCAAGGAAGGAAAAGATTACTTTAAAAACCTTCACAAGCACAAAAAAGACTTTT TATGGATGGATGAGCTGGACGGGGACGCGATAGAGCTTGCGTTTAGTAAAAAGAAGATTGAAGCAAGGAAGAATTGGCTTCGGCAGCATGAGCCTGGTAC TCACCTTGATCACAATCAGAAGATCATAAAGTACAGTGACTTCATTAACAAGGAGCTTATATTGTTTTCTATGGCGGATCTTCAAAGGTCCATACCTTCA ATGGTTGATGGCCTGAAGCCTGGTCAGAGGAAGATCCTTTTCTGTTCTTTTAAGAGGAATTTTGTCAAAGAAGCAAAAGTTTCCCAGTTTTCTGGTTATG TATCCGAGCATTCTGCTTATCATCATGGAGAGCAGAGTCTTGCCGGTACCATCATTGGAATGGCACAAGATTTTGTTGGCAGTAACAACATTAACCTTCT TCAGCCAAATGGTCAATTTGGCACTCGCAGTGTGGGAGGCAAAGACCATGCAAGTGCTAGGTACATTTATACGCAGCTTTCTCCTATTACAAGGTTCTTG TTCCCAAAGGATGATGATGGCCTTCTTAACTACTTGGATGAAGATGGGCAAACCATTGAACCTACTTGGTACATGCCAATTATACCAACGGTCCTTGTAA ACGGTTGTGAAGGAATCGGCACTGGCTGGAGCACTTTCATCCCTAACTATAACCCAAGGGATGTTGTTGCAAATATAAGGCGGTTGTTGAATGGTGAAAT GATGGAGCCTATGAATCCATGGTATAGAGGTTTTAAAGGAACTATTGAAAAAGGTGCATCCAAGGAAGGTGGTTGTAGTAGCTACACAGTAAATGGAGTC ATTAACGAAGTCAATGAGACAACACTCAGGATAACTGAACTGCCTATCCGTAGATGGACTGATGATTACAAGGCATTTTTGAATTCGGTTACAGAGGGGA CTAGAGATGAAAATGGCAATTTACCAAAAGATCCCTTCGTTAAGGATTTCAGAAAGTATGGTGATGATGCTGCTGTACATTTTGAAGTTCAGTTGTCGGA AGAGAACATGCTGGTTGCAAAGCAAGAGGGTTTGCTAAAGAAATTTAAATTAACTACCACAATTAGTACGAGTAACATGCACCTCTTTGATTCAGCAGGG GTGATTAAGAAATATGACAACCCTGAACAAATTCTTGAAAATTTTTTCCACTTACGGCTTGAATACTACGAGACAAGGAAGAAAGTTCTGCTGGAAAATC TAGAATTTGAGTTGTTGAAATTGGAAAACAAGGTCAGGTTTATCCTTGGAGTTGTGAGAGGGGAAATCATTGTGAACAACAGGAAAAGAGCCGATCTGTT ACTGGAGTTGCACCAGAAAGGTTTTAATCCCATTCCAAAGAAATCTAAGGCTGTTGTTGCTGGGGCAACTGACGATACAGAAGAAGCAGAAGACAGCCCT GATGTTTCTGGAGTGCGGGCTAGTGACTATGATTATTTGCTGTCAATGGCAATTGGAACCTTGACACTTGAGAGGGTTCAACAGCTATGTGCTGACCGGG ACAAACTGAATGGGGAGGTTGACAGTTTAAGGAAGACAACTCCGAAAGTTTTGTGGGTGAAAGATCTCGAGGCTCTTGAGATGCAACTTGATATGCTGGA TGAATATGATGCTGAAGCAGAGGAGGCAAGAAGGAAATTAAAAGGTGGTGGTGCAAAGGGTGAAGCTGGTTTTAAGGTTTCTAAACAAGCACCTAAATAT CCACGGAAGAACACTAAGAAAGCCATAAACGAAGAAGTATCTGTTGAGACCACAGGAACATCATCCAGTTTTGCAATTGAAACAGCGTCGTCAGAGAATG CTGCTGCGGTAGTGAAACCCAAAGGAAGGGCAGGCTCAAAGAAGGCTCCTGCTAAAATGCAGGAAAAACTCTCTCCAGTTTTGGATGACTTTGATGAGGA TGATGAAATAGAATCTCTGAAGGATCGACTTAATGCATATAGACTTGATTCTTCGCCTGAGCAATCAGCTGATATGGAAACTGATGTGCTACAAGTACCA GCTAGGAGAGGTGCTGCTCGGAAGAAGCCTCTAGCAAATGTTTCAGTGATCTCTGATAGTGAGGATGAACCAAACCTTGACGATGACGCTGATGTAGAAG TGAAAGCTTTACCAGAAACAAAAAAGAAGGGGGGCAGAAAAGCTGCTGCTGCAAATGACAAGGCAGCCAAACCACCTGCAGCAACAAAGAGGAGAGGACC GGCCAGCCAGCAGTCCCAGGGATTGGGCCAGAAACTTCTAACGGAAATGTTGAAGCCTGCTGAAGGAGCAGGAATATCTCCAGAAAAGAAAGTGAGGAAA GTGAGGGCATCTCCATTCAACAAGAAGAGTGGTTCTGTGTTGGGCAGAATTCACAAGGAAGATGATACTGGAAGTGAACCGATGTCAGCTTCTTCATCTG AAAACACTGATGTCATTGACGTCCCGGCAAGAGCAAGACCGCAGAGGGCAAACCGGAAGCAGACTAGGTACGTGCTGAGTGACTCTGAGAGTGAGAAGGA AGACTCTGATTTTGAGCAGGCTAATGATGATTCAGACTCTTCCTCTGACTAG
AA sequence Show only first row Show all	>Potri.009G058900.1 pacid=42771617 polypeptide=Potri.009G058900.1.p locus=Potri.009G058900 ID=Potri.009G058900.1.v4.1 annot-version=v4.1 MAAETKKIPLSTSDSLNMNQEKTIEETYQKKSQLEHILLRPDTYIGSIEKHAQILWVFENDKMVHRSVTYVPGLYKIFDEILVNAADNKQRDPKMDSLKV VIDVENNLVSVYNNGDGVPVDMHKEEGVYVPELIFGHLLTSSNYDDTMKKTTGGRNGYGAKLTNIFSTEFVIETADGKRKKKYKQVFSNNMGKRSEPIIT KCKESENWTKVTFKPDLAKFSMTHLEEDVVALMKKRVVDMAGCLGKTVKVELNGSRVPVKSFQDYVNMYLNSAAESGSERPKCFYDKVGERWEVCVSLTE GQFQQASFVNSIATIKGGTHVDYVTNQITNYVMNAVNKKHKNGNIKAHNVKNYLWVFVNCLIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVAKSD IVDNLLSWAKFKENKELKKTDGTKTAKVNVPKLEDANEAGGRYSEKCTLILTEGDSAKALAIAGVAGLSQMERNFYGVFPLRGKLLNVREATSKQLKENK EIESIKKILGLQHDKQYSNVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSLLKVPSFLVEFITPIVKATHRNGTVLSFYSMPEYEYWKESLSGNA SGWSIKYYKGLGTSTSKEGKDYFKNLHKHKKDFLWMDELDGDAIELAFSKKKIEARKNWLRQHEPGTHLDHNQKIIKYSDFINKELILFSMADLQRSIPS MVDGLKPGQRKILFCSFKRNFVKEAKVSQFSGYVSEHSAYHHGEQSLAGTIIGMAQDFVGSNNINLLQPNGQFGTRSVGGKDHASARYIYTQLSPITRFL FPKDDDGLLNYLDEDGQTIEPTWYMPIIPTVLVNGCEGIGTGWSTFIPNYNPRDVVANIRRLLNGEMMEPMNPWYRGFKGTIEKGASKEGGCSSYTVNGV INEVNETTLRITELPIRRWTDDYKAFLNSVTEGTRDENGNLPKDPFVKDFRKYGDDAAVHFEVQLSEENMLVAKQEGLLKKFKLTTTISTSNMHLFDSAG VIKKYDNPEQILENFFHLRLEYYETRKKVLLENLEFELLKLENKVRFILGVVRGEIIVNNRKRADLLLELHQKGFNPIPKKSKAVVAGATDDTEEAEDSP DVSGVRASDYDYLLSMAIGTLTLERVQQLCADRDKLNGEVDSLRKTTPKVLWVKDLEALEMQLDMLDEYDAEAEEARRKLKGGGAKGEAGFKVSKQAPKY PRKNTKKAINEEVSVETTGTSSSFAIETASSENAAAVVKPKGRAGSKKAPAKMQEKLSPVLDDFDEDDEIESLKDRLNAYRLDSSPEQSADMETDVLQVP ARRGAARKKPLANVSVISDSEDEPNLDDDADVEVKALPETKKKGGRKAAAANDKAAKPPAATKRRGPASQQSQGLGQKLLTEMLKPAEGAGISPEKKVRK VRASPFNKKSGSVLGRIHKEDDTGSEPMSASSSENTDVIDVPARARPQRANRKQTRYVLSDSESEKEDSDFEQANDDSDSSSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.009G058900 [exp]	0	1	TOP2.3
AT2G36200			P-loop containing nucleoside t...		Potri.016G077800 [exp]	2.00	0.9711
AT5G60930			P-loop containing nucleoside t...		Potri.005G150800 [exp]	2.44	0.9717
AT3G20150			Kinesin motor family protein (...		Potri.001G360200 [exp]	2.44	0.9771
AT1G18550			ATP binding microtubule motor ...		Potri.012G058400 [exp]	2.44	0.9722
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.001G264000 [exp]	2.64	0.9660	TOP2.2
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.001G415800 [exp]	2.82	0.9649
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Potri.017G013100 [exp]	3.87	0.9703
AT5G11510	MYB	ATMYB3R-4, AtMY...	myb domain protein 3R4, myb do...		Potri.006G241700 [exp]	4.89	0.9604	Pt-MYB3.2,MYB160
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Potri.011G031200 [exp]	7.07	0.9618	ATK1.2
AT1G18090			5'-3' exonuclease family prote...		Potri.015G041400 [exp]	7.34	0.9467

Compare expression of checked genes

Potri.009G058900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.