Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63500 702 / 0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT1G14740 335 / 2e-100 Protein of unknown function (DUF1423) (.1) AT5G48160 284 / 2e-83 OBE2 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT3G07780 273 / 1e-79 OBE1 OBERON1, Protein of unknown function (DUF1423) (.1) AT5G57380 64 / 7e-10 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) AT3G24440 50 / 1e-05 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G264100 [exp] 1742 / 0 AT3G63500 660 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.010G102600 [exp] 375 / 1e-113 AT1G14740 773 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.008G138100 [exp] 372 / 7e-113 AT1G14740 729 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.002G221500 [exp] 286 / 2e-84 AT5G48160 811 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.014G164800 [exp] 286 / 5e-84 AT5G48160 859 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.018G091500 [exp] 55 / 4e-07 AT4G30200 612 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.018G076500 [exp] 48 / 4e-05 AT3G24440 531 / 0.0 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.006G167800 [exp] 47 / 8e-05 AT4G30200 627 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.006G158676 [exp] 44 / 0.0008 AT3G24440 523 / 9e-179 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016399 [exp] 1245 / 0 AT3G63500 717 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10019718 [exp] 1113 / 0 AT3G63500 665 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10013248 [exp] 298 / 6e-91 AT1G14740 466 / 7e-160 Protein of unknown function (DUF1423) (.1) Lus10012327 [exp] 291 / 4e-86 AT5G48160 878 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10006372 [exp] 291 / 8e-86 AT5G48160 871 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10030770 [exp] 271 / 4e-82 AT1G14740 394 / 7e-133 Protein of unknown function (DUF1423) (.1) Lus10030769 [exp] 86 / 4e-19 AT1G14740 136 / 5e-38 Protein of unknown function (DUF1423) (.1) Lus10028170 [exp] 53 / 2e-06 AT5G57380 239 / 8e-72 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10010550 [exp] 51 / 5e-06 AT1G05410 356 / 1e-118 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10042869 [exp] 51 / 6e-06 AT5G57380 237 / 5e-71 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF07227 [poplar] [flax] PHD_Oberon PHD - plant homeodomain finger protein CL0390 [poplar] [flax] PF16312 [poplar] [flax] Oberon_cc Coiled-coil region of Oberon
Representative CDS sequence Show only first row Show all	>Potri.009G059000.3 pacid=42772922 polypeptide=Potri.009G059000.3.p locus=Potri.009G059000 ID=Potri.009G059000.3.v4.1 annot-version=v4.1 ATGAAGAGATTGAGATCAAGTGATGATCTTGATTCTTATAACGAGAAAACCTCAGTCAAGGATTCAAATCCAAGTAGACCGTCTAGAAGTTTCTATTACA AATCCGATAATGCGCGCAAAGGGTTGATTTCCACGTCATCATCCTCGACCCGGTATGATCGAGGCCGATCTATTGATGATGATAATAGAGAGAGCACCAG AATGGTTAAGAAGCGATCAGATCATGAATTTGATAGCTTTGATCGAAGAAAAGGGTTAGGGTTTGATAGGTATGGCAATGGAGGAGGTAGCGGTAATAGT AGAGAAGGGTATGGTGGAATTAGTGGTGGTGGGAATGATAGGGTTATTCTTCGATCGGAGAGCTTTTGTGGGTCGAGGAGGGATTTTCCGAAAGGGTTTA GGTCGGAGAGGGAAAGGTCGAGGAGAGAAGGGAGTGTTTCGTCGTGGAGGAGGTTTGGGGGTAAAGAATTTGAGGAGAATAGAGGAGCTAGTAGTAGAGG TGGAAATGAGGAGAGGATGGGGAGTGCTAGGTCGTCTCCTAAGGGGTTGAGAGATGTTGTTAGGTCACCTTCTTGGTCGAGGGATTCAGGGAGTGAGCAA ACTAGGGTGGTACGAGGAAGTGTTTGTGGGAGGGATGAGGGGAAAGTGAAGTCTTCAAATTCTAAGTCGAGGTCGTCACCCACATGGTCGAAGGATTCGG GGAGTGAGCAATCGAAGAGTGTGGAAGTGGGGAAGAAAAGTGAACCGGAGACAAAAAGTGCTGAGGTGGAGGCTAAAAGTGCTGAGATGGAGGTGAAGAG TGTTGAGAGTGGGAATAATAGTGAAATGGAAGAAGGGGAGCTTGAGCCAGAACCTGATTCAGTTCCTAAAGTTGCCAAGGAAAATGAGAATGATAATGGC AATGAAAGACGAGAGGATGTTATAGAAGATATTGATCAGAGGAAGGTTGAGATTGAGTCCGAAGTTAAGGATCAAGTAAATGAAGAGGAGAAAAGGCCCG ATAAAGTAAATGTTCACGAGGGGAAGGATGTGGCGAAGGAAGTTGATGAGATGCGAAATGTTGAGGAGAGTTCTAATGATAATGCTAGTGTCACGGAGGA TGAAGTTGGGAAGAGGGTTGCTGGTGAAGATAACAAGGACAGCCAGAGTATGAAGGAAAAAGTCGAGTGCAAGGAGGAGGGAAGTAAGAATATAGCTGTC GTGGAGTCTCAGAGCTCGGAGGAGGATAATAGGCAAGGTAAGGGTATCGATCTTGAGGTGAAGGCAGAGGAGGTTGAAGTGCCAGAGTCAAATAAGGAAA TTGTTAAGGAAAATGAAGGAGCTGAAGTGAATATAAATGCAGTGACAGGGGTTTTGAGCCAGAACTTGAAGGACAAGGGCAAAAGTGTCGTTATTTCACC AACCAACGATGTTGATTCTGCAGAAGATGGTGCATGGGTCGAAAGAGAATCGAGAAACGTTGCCATATTCAGGAATGGGGAAGACGATATGGAAGGACCT AGTACTAGGGGATTTGAGTTATTTACTAGCTCTCCTGTTAGAAGAGTTGAGAAATCAGAGCAATCGCGTGGTAGTAAGTCAAAAGATGAAAAGCTGCTGT TGGAACCGCTTGATCTTTCTCTCAGCTTACCAACTGTTTTGTTGCCTATTGGTGCAACAGGAGACACGACCCAGGCTCCTGGTTCTCCAAGCCATGGGAG AAGTGTTCAGTCCTTTAGCTCATTTCGAACAAATTCAGACGGGTTTACTGCATCAATGTCATTTTCAGGTTCTCAGTCATTTATTCATAATCAAAGCTGT TCTCTAACTCAGAATTCGTTGGACATGGACAACTATGAACAATCTGTTCACAGCCGCCCCCTATTTCAGGGTATTGATCAAACGAATTGGCAGGGTCAGA CTCAAAATGACTCCAAGCATAAAGATGTTCCCTTGTATCAAAAAATTTTGATGAATGGAAATGGCTCTCTTCATCAGCCTCAAGCAGTACAGGGTTTGTC AAATGGTCAAGCTTTGCAAGGAAGCTCTAAAATGCCCAATGAACTTGAAAGACAATTGAGTTTCCATAGACAGTTGTCAGGAGGGCAGGCAAGGAATCAT GATGACACTAGATCCCCTTCTCAAAGTGTGGGATCCCATGATATTGGTTCGAATTATAGCTTTGAGAAGAAGCGTGCCGTGAAAGAGAAACATGGCAGTA GCCTATATAGGAGCAATAGCCAGAAGGAACAAGAGCAATTTCTGATAGGCGGAGCTGATTTTGTTGAGACTATCCTTGGCAGAATAGTTTCTGAGCCCAT TCATGTGATGGCTAAGAAATTCCATGAAATGGCAGCACAAGCATCATGTTTAAAGGAGAGCATCCGTGAGATTCTGTTAAATACCGATAAGCAAGGGCAA ATATGTGCACTTCAAAGCGTGCTGCAAAACAGGTCTGACTTAACCTTGGATATGCTGTTGAAATCCCATCGTGCTCAACTGGAAGTCTTGGTAGCTTTGC GAACAGGTTTTCCAGAGTATCTCCAAGTAGACAGTGGCATTTCATCTTCTCATCTGGCTGAGATTTTCCTGAACTTGAGGTGCAGAAATCTGACATGTCA AAGTCTTTTGCCTGTGGATGAATGTGATTGCAAAGTTTGCGCGAAGAAAAATGGTTTTTGCAGTTTATGTATGTGTCTTGTGTGCTCGAAGTTTGATATG GCATCTAATACATGTAGTTGGGTTGGGTGTGATGTTTGCCTTCATTGGTGTCATGCTGATTGTGCATTACGAGAAGCTTACATTAGGAATGGAAGGAGTG CCAGTGGTGCTCAAGGGACTACTGAGATGCAGTTCCATTGCGTTGCCTGTGATCATCCTTCTGAGATGTTTGGCTTTGTGAAGGAGGTTTTTCAGAACTT TGCAAAAGATTGGACTGCAGAAACATTTTGCAGAGAACTTGAATATGTCAAGAGAATTTTCCGTGCCAGCAAGGATGTGAGAGGGAGACGTCTGCATGAA ATAGCTGATCAGATGCTGGCAAAATTGGCAAATAAGTCCAATCTTCCCGAGGTTTATAATTATATAATAGTATTGCTGACTGAAAGTGATCCATCCAAGT TTGGCAACGCATCTGGTTTTTTCTTGAAGGAACAAGGAAATGGAAGCAATGGTGCCATTGCTGGACCTAGCCACGATGCTGCATGGATCAAATCTGTATA CACTGAAAAAATTCCTCAATTGGAAAGATCAACTAGCCTACGTCCTAGCTTCCATTCTGACTTGAATGATAAATGCCCTGTTGAACCCGAGTTACTGAGA AGTGCCCGAAAGGAGCCCCTTTTTGATGAACTGGAGAGCATTGTTAGAATCAAACAGGCAGAAGCTAAGATGTTTCAAGCACGTGCTGATGATGCTAGAA GAGAAGCTGAGGCCCTGAAACGAATTGCGATTGCGAAGAGTGAAAAAATCAAGGAAGAGTTCGCAAGTAGAATCTCTAAATTGCGCATAGTTGAGGTTGA GGAAATGCGTAAACAAAAATTTGAAGAATTTCAGGCCCTGGAAAGAGCTCATCGGGAATATTTCAGTATGAAGACGAGGATGGAAGCTGATATTAAGGAT CTCTTATTAAAAATGGAAGCTGCTAAACGAAACATCACCTTGTGA
AA sequence Show only first row Show all	>Potri.009G059000.3 pacid=42772922 polypeptide=Potri.009G059000.3.p locus=Potri.009G059000 ID=Potri.009G059000.3.v4.1 annot-version=v4.1 MKRLRSSDDLDSYNEKTSVKDSNPSRPSRSFYYKSDNARKGLISTSSSSTRYDRGRSIDDDNRESTRMVKKRSDHEFDSFDRRKGLGFDRYGNGGGSGNS REGYGGISGGGNDRVILRSESFCGSRRDFPKGFRSERERSRREGSVSSWRRFGGKEFEENRGASSRGGNEERMGSARSSPKGLRDVVRSPSWSRDSGSEQ TRVVRGSVCGRDEGKVKSSNSKSRSSPTWSKDSGSEQSKSVEVGKKSEPETKSAEVEAKSAEMEVKSVESGNNSEMEEGELEPEPDSVPKVAKENENDNG NERREDVIEDIDQRKVEIESEVKDQVNEEEKRPDKVNVHEGKDVAKEVDEMRNVEESSNDNASVTEDEVGKRVAGEDNKDSQSMKEKVECKEEGSKNIAV VESQSSEEDNRQGKGIDLEVKAEEVEVPESNKEIVKENEGAEVNINAVTGVLSQNLKDKGKSVVISPTNDVDSAEDGAWVERESRNVAIFRNGEDDMEGP STRGFELFTSSPVRRVEKSEQSRGSKSKDEKLLLEPLDLSLSLPTVLLPIGATGDTTQAPGSPSHGRSVQSFSSFRTNSDGFTASMSFSGSQSFIHNQSC SLTQNSLDMDNYEQSVHSRPLFQGIDQTNWQGQTQNDSKHKDVPLYQKILMNGNGSLHQPQAVQGLSNGQALQGSSKMPNELERQLSFHRQLSGGQARNH DDTRSPSQSVGSHDIGSNYSFEKKRAVKEKHGSSLYRSNSQKEQEQFLIGGADFVETILGRIVSEPIHVMAKKFHEMAAQASCLKESIREILLNTDKQGQ ICALQSVLQNRSDLTLDMLLKSHRAQLEVLVALRTGFPEYLQVDSGISSSHLAEIFLNLRCRNLTCQSLLPVDECDCKVCAKKNGFCSLCMCLVCSKFDM ASNTCSWVGCDVCLHWCHADCALREAYIRNGRSASGAQGTTEMQFHCVACDHPSEMFGFVKEVFQNFAKDWTAETFCRELEYVKRIFRASKDVRGRRLHE IADQMLAKLANKSNLPEVYNYIIVLLTESDPSKFGNASGFFLKEQGNGSNGAIAGPSHDAAWIKSVYTEKIPQLERSTSLRPSFHSDLNDKCPVEPELLR SARKEPLFDELESIVRIKQAEAKMFQARADDARREAEALKRIAIAKSEKIKEEFASRISKLRIVEVEEMRKQKFEEFQALERAHREYFSMKTRMEADIKD LLLKMEAAKRNITL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63500			Protein of unknown function (D...		Potri.009G059000 [exp]	0	1
AT2G16485			nucleic acid binding;zinc ion ...		Potri.009G123800 [exp]	3.87	0.8939
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Potri.013G135300 [exp]	4.58	0.8462
AT4G11560			bromo-adjacent homology (BAH) ...		Potri.001G104300 [exp]	5.47	0.8376
AT3G63500			Protein of unknown function (D...		Potri.001G264100 [exp]	5.74	0.8857
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.002G027100 [exp]	6.70	0.8598
AT5G27230			Frigida-like protein (.1)		Potri.005G043900 [exp]	7.21	0.8827
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.017G041100 [exp]	7.48	0.8886
AT5G64550			loricrin-related (.1)		Potri.001G206600 [exp]	8.06	0.7840
AT5G12400			DNA binding;zinc ion binding;D...		Potri.009G049100 [exp]	8.94	0.8579
AT3G26560			ATP-dependent RNA helicase, pu...		Potri.012G034200 [exp]	9.21	0.8806

Compare expression of checked genes

Potri.009G059000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.