Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TWD1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21640 548 / 0 FKBP42, UCU2, TWD1, ATFKBP42 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48570 130 / 3e-33 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 125 / 9e-32 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT3G54010 82 / 8e-17 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT1G58450 67 / 3e-13 TPR6 tetratricopeptide repeat 6, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G15790 61 / 4e-10 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT5G21990 61 / 5e-10 OEP61, TPR7 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G56440 53 / 2e-07 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G30480 50 / 1e-06 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT5G48580 46 / 9e-06 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G264400 [exp] 669 / 0 AT3G21640 556 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248300 [exp] 136 / 3e-35 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.014G149400 [exp] 121 / 3e-30 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G117200 [exp] 117 / 8e-29 AT5G48570 553 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G033400 [exp] 101 / 3e-23 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G151700 [exp] 78 / 2e-15 AT5G21990 700 / 0.0 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G190600 [exp] 77 / 5e-15 AT5G21990 693 / 0.0 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G105100 [exp] 72 / 1e-13 AT3G54010 825 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Potri.004G144300 [exp] 67 / 5e-12 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029505 [exp] 434 / 3e-153 AT3G21640 409 / 5e-144 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10039604 [exp] 360 / 4e-123 AT3G21640 327 / 3e-110 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10002338 [exp] 127 / 1e-31 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10003171 [exp] 124 / 1e-30 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10038216 [exp] 119 / 2e-29 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10025888 [exp] 119 / 3e-29 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10021502 [exp] 81 / 2e-16 AT3G54010 847 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10019379 [exp] 74 / 4e-14 AT5G21990 658 / 0.0 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022603 [exp] 73 / 1e-13 AT3G54010 831 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10036162 [exp] 69 / 2e-12 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [poplar] [flax] FKBP PF00254 [poplar] [flax] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase CL0020 [poplar] [flax] TPR PF07719 [poplar] [flax] TPR_2 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.009G059200.1 pacid=42772490 polypeptide=Potri.009G059200.1.p locus=Potri.009G059200 ID=Potri.009G059200.1.v4.1 annot-version=v4.1 ATGGAGGAGATTCCAAGCCAATCGATTGGTAAAGATGATGAAAATGAAAGAGCTATGGAAGAAGCTGCGGTTGTGCGTGGTGAGCCTTTGCAAGATGGGA ATCATCCTCCGAAAGTCGAATCCGCGGTTGAAATACTTCAAGAGAAAGTCACCAAGCAAATCATTAAGGAAGGTCATGGTCAGAAGCCAACCAAATATGC AACATGCTTTTTGCACTACAGGGCATGGACAGAAAGCACTCAGCACAAGTTCGATGATACATGGCATGAACAACGACCATTTGAAATGGTTTTAGGAAAA GAGAAGAATGAAATGGCGGGTTTAGCTGTTGGTGTTTCCAGTATGAAGGCTGGTGAACGTGCCCTCTTACATGTGGGCTGGGAATTAGGCTATGGGAAAG AAGGGAACTTTTCTTTCCCAAATGTTCCTCCCATGGCAGATATAATATATGAAGTCGAGCTTATAGGATTTGATGAAGTCAAAGAAGGGAAAGCTCGTGG TGATATGACTGCAGAAGAGAGGATCGGTGCAGCAGATCGAAGAAAAATGGATGGAAATTCTCTATTTAAGGAGGAAAAACTTGAGGAGGCTATGCAGCAG TATGAAATGGCAATTGCATATTTGGGCGACGACTTTATGTTTCAGCTGTTTGGCAAGTACCGAGACATGGCATTGGCAGTGAAGAATCCATGTCATCTTA ACATGGCGGCTTGTCTGATCAAGCTTGAGCGCTATGAAGAAGCCATTGCACAATGCACCATTGTATTGGTAGAGGATGAAAACAATGCTAAGGCTTTGTT CAGAAGAGGGAAAGCCAGAGCAGAGCTTGGGCAGACAGATGCTGCCCGGGAAGACTTTCTCAAGGCACGTAAACATGCACCTGAAGACAAGGCAATTTTG AGGGAGTTGCGTTTGCTGGATGAGCATGATAAAGCTATATATAAGAAGCAAAAGGAGATATATAGAGGGATTTTCGGACCACCACCACAGCCAAAACCGA AGCCAACTAATGTGCTGATTCGCATATGGCAATGGTCAATCCTCGTCTGCCAATGGCTGCTATCACTGATTTATCGCCTCTTCAGGCGTGAAAGGCACAA AGCCGACTAA
AA sequence Show only first row Show all	>Potri.009G059200.1 pacid=42772490 polypeptide=Potri.009G059200.1.p locus=Potri.009G059200 ID=Potri.009G059200.1.v4.1 annot-version=v4.1 MEEIPSQSIGKDDENERAMEEAAVVRGEPLQDGNHPPKVESAVEILQEKVTKQIIKEGHGQKPTKYATCFLHYRAWTESTQHKFDDTWHEQRPFEMVLGK EKNEMAGLAVGVSSMKAGERALLHVGWELGYGKEGNFSFPNVPPMADIIYEVELIGFDEVKEGKARGDMTAEERIGAADRRKMDGNSLFKEEKLEEAMQQ YEMAIAYLGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLERYEEAIAQCTIVLVEDENNAKALFRRGKARAELGQTDAAREDFLKARKHAPEDKAIL RELRLLDEHDKAIYKKQKEIYRGIFGPPPQPKPKPTNVLIRIWQWSILVCQWLLSLIYRLFRRERHKAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Potri.009G059200 [exp]	0	1	Pt-TWD1.1
AT5G41560			unknown protein		Potri.001G099200 [exp]	1.41	0.8417
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G021250 [exp]	9.16	0.7991
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.009G156500 [exp]	9.48	0.8201
AT5G58610			PHD finger transcription facto...		Potri.002G118600 [exp]	9.59	0.7357
AT4G10750			Phosphoenolpyruvate carboxylas...		Potri.001G084900 [exp]	10.39	0.6590
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Potri.008G076800 [exp]	13.03	0.7155
AT2G19170		SLP3	subtilisin-like serine proteas...		Potri.001G151100 [exp]	13.41	0.8106
AT3G10200			S-adenosyl-L-methionine-depend...		Potri.006G043600 [exp]	19.89	0.7024
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.003G214100 [exp]	20.19	0.7692
					Potri.002G248000 [exp]	20.78	0.6845

Compare expression of checked genes

Potri.009G059200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.