Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08010 471 / 8e-167 ATAB2 RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G059800 [exp] 616 / 0 AT3G08010 471 / 7e-167 RNA binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029507 [exp] 490 / 4e-174 AT3G08010 532 / 0.0 RNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06485 [poplar] [flax] Tab2_like RNA-binding protein Tab2/Atab2
Representative CDS sequence Show only first row Show all	>Potri.009G059600.1 pacid=42771804 polypeptide=Potri.009G059600.1.p locus=Potri.009G059600 ID=Potri.009G059600.1.v4.1 annot-version=v4.1 ATGGCTACTCTTAGCTTCAATCCAACCAGAATTCCTCACAAACCCATCTCCAAAATCACTTCTTTCTCAAAACCCTCAGAGATACCTTTCCCTTTGTCTC TAAAACCCTCAAAAAACCACGTAATACCACTCCATTTCCAATCAAACATCATAACCAAACTCTCAGTTTCAACACAAGAAGAAGAAGTGGAGACTGAAAA GAAGGACTACGAAGAAGATGATCCAACTACAGAAATGGTCTATCTTGACCCGGAAACTGATCCAGATAGCATTGTGGAGTGGGAGTTGGATTTTTGTTCC AGGCCTATACTTGATGTCAGAGGCAAGAAAGTATGGGAGCTTGTTGTTTGTGATGATTCTTTGTCACTTCAATTCACAAAATACTTCCCGAACAATGTTA TCAATAGTATCACTTTGAAGGATGCTATTGTATCCATTAGCGAGGATCTTGGTGTCCCCCTGCCTGAAAGAATCAGGTTCTTCAGGTCTCAGATGCAGAC AATTATAACCAAAGCATGTAAAGAGATAGGTATAAAGCCTATTCCAAGTAAACGGTGTATATCACTACTTCTATGGCTCGAGGAGCGCTATGAGACTGTA TATACGCGTCATCCTGGTTTCCAAAAGGGAGCTAAACCACTTCTGGCATTAGATAACCCTTTCCCAATGGAACTTCCAGACAATCTTTTTGGGGAGAAAT GGGCATTCGTCCAATTACCTTACTCAGCTGTCCGAGAGGAAATTGCATCATTAGAGACAAGTTTTTTTTTTGGTGCAAGTCTGGATTTGGATTTATTGGG AATTGAGATTGATGACAAGACAATGATACCTGGACTTGCTGTTGCATCTTCACGTGCTGAACCATTAGCAGCGTGGATGAACGGGCTGGAAGTGGTCGCG ATCGAAGCTGACACTTCTCGTGCTTGCTTGATTCTATCAGTTGGAATTGCAACCCGTTATGTTTATGCTACCTATAAGAAAACTCCTGTAACAACAGCTG AAGCTGAAGCCTGGGAAGCTGCAAAGAAGGCATGTGGAGGTTTACATTTTCTTGCCATCCAAAACGACTTGGATTCAGATGACTGTGTTGGATTTTGGCT TTTACTAGACTTGCCGCCTCCACCTGTATGA
AA sequence Show only first row Show all	>Potri.009G059600.1 pacid=42771804 polypeptide=Potri.009G059600.1.p locus=Potri.009G059600 ID=Potri.009G059600.1.v4.1 annot-version=v4.1 MATLSFNPTRIPHKPISKITSFSKPSEIPFPLSLKPSKNHVIPLHFQSNIITKLSVSTQEEEVETEKKDYEEDDPTTEMVYLDPETDPDSIVEWELDFCS RPILDVRGKKVWELVVCDDSLSLQFTKYFPNNVINSITLKDAIVSISEDLGVPLPERIRFFRSQMQTIITKACKEIGIKPIPSKRCISLLLWLEERYETV YTRHPGFQKGAKPLLALDNPFPMELPDNLFGEKWAFVQLPYSAVREEIASLETSFFFGASLDLDLLGIEIDDKTMIPGLAVASSRAEPLAAWMNGLEVVA IEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQNDLDSDDCVGFWLLLDLPPPPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08010		ATAB2	RNA binding (.1)		Potri.009G059600 [exp]	0	1
AT3G12930			Lojap-related protein (.1)		Potri.011G142900 [exp]	1.73	0.9771
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Potri.013G064700 [exp]	2.82	0.9751
AT1G14270			CAAX amino terminal protease f...		Potri.008G147600 [exp]	4.24	0.9742
AT1G73885			unknown protein		Potri.015G054100 [exp]	4.47	0.9768
AT2G36990		SIG6, SIGF, ATS...	SIGMA FACTOR 6, RNApolymerase ...		Potri.006G125700 [exp]	4.58	0.9722	SIGF.1
AT5G38520			alpha/beta-Hydrolases superfam...		Potri.019G063900 [exp]	5.47	0.9749
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Potri.002G215100 [exp]	6.92	0.9684
AT3G05410			Photosystem II reaction center...		Potri.005G027100 [exp]	8.83	0.9654
AT3G19220		CYO1 ,SCO2	SNOWY COTYLEDON 2, SHI-YO-U ME...		Potri.009G102400 [exp]	10.81	0.9530
AT1G06430		FTSH8	FTSH protease 8 (.1)		Potri.002G220366 [exp]	11.31	0.9644

Compare expression of checked genes

Potri.009G059600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.