Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08020 748 / 0 PHD finger family protein (.1) AT3G52100 417 / 7e-135 RING/FYVE/PHD-type zinc finger family protein (.1) AT1G77250 52 / 1e-06 RING/FYVE/PHD-type zinc finger family protein (.1) AT3G61740 52 / 1e-06 SDG14, ATX3 SET domain protein 14 (.1.2) AT5G53430 45 / 0.0002 SET29, ATX5, SDG29 SET domain group 29 (.1) AT3G01460 45 / 0.0003 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G059500 [exp] 1332 / 0 AT3G08020 763 / 0.0 PHD finger family protein (.1) Potri.001G264800 [exp] 1244 / 0 AT3G08020 701 / 0.0 PHD finger family protein (.1) Potri.002G076900 [exp] 56 / 8e-08 AT1G77250 332 / 3e-107 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.005G183700 [exp] 54 / 3e-07 AT1G77250 315 / 2e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.012G013900 [exp] 54 / 6e-07 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.015G014300 [exp] 52 / 2e-06 AT5G53430 1322 / 0.0 SET domain group 29 (.1) Potri.014G098400 [exp] 50 / 1e-05 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.002G170600 [exp] 47 / 6e-05 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.017G072460 [exp] 47 / 8e-05 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019715 [exp] 753 / 0 AT3G08020 726 / 0.0 PHD finger family protein (.1) Lus10016404 [exp] 591 / 0 AT3G08020 569 / 0.0 PHD finger family protein (.1) Lus10042764 [exp] 63 / 6e-10 AT1G77250 301 / 1e-95 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10029733 [exp] 61 / 4e-09 AT1G77250 313 / 5e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10012626 [exp] 56 / 1e-07 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10010121 [exp] 56 / 1e-07 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10005007 [exp] 52 / 2e-06 AT4G27910 611 / 0.0 SET domain protein 16 (.1) Lus10019026 [exp] 52 / 2e-06 AT4G27910 1171 / 0.0 SET domain protein 16 (.1) Lus10004012 [exp] 51 / 3e-06 AT3G61740 424 / 2e-136 SET domain protein 14 (.1.2) Lus10030262 [exp] 50 / 1e-05 AT3G61740 742 / 0.0 SET domain protein 14 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G059700.3 pacid=42771714 polypeptide=Potri.009G059700.3.p locus=Potri.009G059700 ID=Potri.009G059700.3.v4.1 annot-version=v4.1 ATGGCCTTTCACGTAGCTTGCCCAATTACATGTCGCCGAATTTGTTTTTGCTCCCTAGGGTTTCCGCGAGATCTCCACTCTACGAAACCAAAGGCCGACT TCCTGTTCGATGTAGCGAGAATCGATGAGTTTTTGAAGGATCCTTTGGGAATTAGGGCTTCCAGGGAAGGAACTGTCCTGGTTTCCGTTCCTAAGGTTGT GCCTGTGCCGGCTCAGATTCCCCCGACGCATTCGCTAGAGGTCGTTTCGGCGAGAGATAGAGAAGGTGATGGTGGTGTGGGGGAGGAGGCTTTTTCAACG CAGACTAAGCGCGTGGCTATTCAAAGGCAGGCTGCTGCTGCTAAGGCATCTGCGGAGTATTATGCTAAGGTCGAGTCTGGTGATACCGTTGCCTCAAAAG ATACTCCTGGAGAAGATGCGGGTCCATTATGTCAGATATGCTTTGTGGGTGAAACAGGGGGGAGTGAGAGAGCGAGGAAGATGCTCCCATGCAAAAGTTG TGGCAAGAAGTACCACAGGAGCTGTTTGAAAACTTGGGCTCGGCATAGAGATTTATTTCACTGGAGTTCGTGGACCTGTCCATCTTGCCAAACTTGCGAG GTATGCCGAAAGACTGGAGATCCAAATAAGTTTGTGTTTTGCAAAAGGTGTGATGGTGCTTACCACTGTTACTGCCAGCATCCTCCACACAAGAATGTCA GCTCTGGACCATACTTGTGCCCCAAACATACAAGGTGTCACAGCTGTGGATCTTCTGTCCCAGGAAATGGACTAAGTGTGAGGTGGTTTCTGGGATACAC GTGCTGTGATGCTTGTGGAAGATTATTTGTGAAGGGAAATTATTGCCCTGTTTGCTTGAAGGTTTATAGAGATTCAGAATCAACTCCAATGGTTTGCTGT GATATATGCCAGCGATGGGTGCACTGTCATTGTGATGGCATAAGTGATGAAAAATATCTTCAGTTTCAAGTAGACGGAAACCTCCAGTACCAATGTGCTA CATGTCGTGGAGAATGCTATCAGGTAAAGGATCTTGAAGATGCTATTCAAGAGCTGTGGAGGCGACGAGATAAGGCTGATCGAGGTTTAATTGCAAGCTT GAGAGCCGCTGCTGGGTTGCCAGCCCAAGAAGACATATTTTCTATCTCTCCTTATTCAGATGGTGATGGAAATGGTCCGGAGGCACTAAGGAATGATTTT GGGCATTCTATAAAACCCTCTCTCAAAGGGATAGTCAGCAAGTCACCAAAGAAGAGCAAGGATCATGGAAAGAAACTTTGGAATAAAAAATATTCCAATA AAAAAGATTCTTATGCTGCTTCAATTAGTAAGACTGTACCACTTCAGCAGGACATTCATTCTTGTGTACATGATTTGGATGATTACAAGAATGATGACAC AGAGTCTCAAGCAAAAGGAGGATTGGGTAGATGTTCTTCTCCTGTTCCTGGAATTGTGAATCACACTGAAGGGACTTGCTCTATCTATCAGCCAGGTGGT TTGAAACACAAGTATGTTAACGAGGTGATGGTGAGCGATGGAGAAAGGACATCCAAAGTTGTTAAAATCAAGAGTAATAAGCCTCGTGATTTGGATAGTG GGTATGATACTGAAAAACATGCTGGCAAGTCGAAGTCTGTTAAGGCAAAGAAATTAGTAATAAATTTAGGGGCACGCAAAATAAACATCACTAGTCCAAA ATCTGATGCTCAAAGCTGCCAAGGCGAACAAGATTGGAAGGCTTCCAATGATGCAGTTGATCACACGGGGAAAACAAAAGGCTTGATTAAGTTTGCAAGG AGAGAAGGGAATTTGATTAAGTTTGGAAAAGTAAAAGCTGAAGCTTCAAACTTCAGTCCCAAATCTGATGGAGGGAGTCATGCTGATGGATATGAAACCG TTCCCCTAGATTATGCTCGTGTTTCATCAGCTAAAAAGAGCCTTGAAGGAAGCAGGGCGGCAGTGGGACCTGCAGGTGAAGTCACTAAATTAAGAAGTGA CAAATTATCTGTGGGAAAGCAATCAGAGGTCAGGGCTGATACGCATACAGAAAGCAATGATGAATCTGGTGACACTCCTATATTGCAATCATTACAAAAG GATTCAAAATTTTCTTTGAAGCTAAAGATTAAGAAACCTAATTTTGAAAATCAGAGTTCTCTGATTCCTCTTCGTGAAGAAGAAAAGAGTAACATAAGGG GCCAAAGGTCAAAAAGGAAGAGATCTTTGAACTTCATGGAGAAAACGATGTATAATGAAGATGAAGGTATGTCACAATCACATCTAGACAGTGAAATGAT GGAGGCTAATTGGATATTGAAAAAATTGGGTTATGATGCTATTGGAAAGAGAGTTGAAGTTCATCAGCCATCTGACAATTCATGGCACAAGGGAGTTGTC TCTGACATTGTTGAAGACACATCAATGTTATCTATTACTCTAGATGATGATAGAGTAAAGACCTTGGAACTTGGGAAGCAAGCAGTTCGCTTTGTTTCTC AAAAGCAAAAGAGGTCAAAAACATGA
AA sequence Show only first row Show all	>Potri.009G059700.3 pacid=42771714 polypeptide=Potri.009G059700.3.p locus=Potri.009G059700 ID=Potri.009G059700.3.v4.1 annot-version=v4.1 MAFHVACPITCRRICFCSLGFPRDLHSTKPKADFLFDVARIDEFLKDPLGIRASREGTVLVSVPKVVPVPAQIPPTHSLEVVSARDREGDGGVGEEAFST QTKRVAIQRQAAAAKASAEYYAKVESGDTVASKDTPGEDAGPLCQICFVGETGGSERARKMLPCKSCGKKYHRSCLKTWARHRDLFHWSSWTCPSCQTCE VCRKTGDPNKFVFCKRCDGAYHCYCQHPPHKNVSSGPYLCPKHTRCHSCGSSVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCC DICQRWVHCHCDGISDEKYLQFQVDGNLQYQCATCRGECYQVKDLEDAIQELWRRRDKADRGLIASLRAAAGLPAQEDIFSISPYSDGDGNGPEALRNDF GHSIKPSLKGIVSKSPKKSKDHGKKLWNKKYSNKKDSYAASISKTVPLQQDIHSCVHDLDDYKNDDTESQAKGGLGRCSSPVPGIVNHTEGTCSIYQPGG LKHKYVNEVMVSDGERTSKVVKIKSNKPRDLDSGYDTEKHAGKSKSVKAKKLVINLGARKINITSPKSDAQSCQGEQDWKASNDAVDHTGKTKGLIKFAR REGNLIKFGKVKAEASNFSPKSDGGSHADGYETVPLDYARVSSAKKSLEGSRAAVGPAGEVTKLRSDKLSVGKQSEVRADTHTESNDESGDTPILQSLQK DSKFSLKLKIKKPNFENQSSLIPLREEEKSNIRGQRSKRKRSLNFMEKTMYNEDEGMSQSHLDSEMMEANWILKKLGYDAIGKRVEVHQPSDNSWHKGVV SDIVEDTSMLSITLDDDRVKTLELGKQAVRFVSQKQKRSKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08020			PHD finger family protein (.1)		Potri.009G059700 [exp]	0	1
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Potri.002G209216 [exp]	2.44	0.9167
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Potri.002G170600 [exp]	4.47	0.8843
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.012G094300 [exp]	6.00	0.8959
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.005G092700 [exp]	6.00	0.8961
AT3G10070		TAF12, TAFII58	TATA-ASSOCIATED FACTOR II 58, ...		Potri.006G083500 [exp]	6.32	0.8841	Pt-TAFII58.1
AT3G08020			PHD finger family protein (.1)		Potri.009G059500 [exp]	10.39	0.8728
AT3G26850			histone-lysine N-methyltransfe...		Potri.018G051900 [exp]	12.72	0.8586
AT3G19895			RING/U-box superfamily protein...		Potri.010G171100 [exp]	16.24	0.8573
AT2G32630			Pentatricopeptide repeat (PPR-...		Potri.003G008900 [exp]	16.94	0.8788
AT2G35530	bZIP	AtbZIP16	basic region/leucine zipper tr...		Potri.003G097600 [exp]	18.33	0.8341

Compare expression of checked genes

Potri.009G059700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.