Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08010 473 / 2e-167 ATAB2 RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G059600 [exp] 626 / 0 AT3G08010 469 / 2e-166 RNA binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029507 [exp] 486 / 1e-172 AT3G08010 532 / 0.0 RNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06485 [poplar] [flax] Tab2_like RNA-binding protein Tab2/Atab2
Representative CDS sequence Show only first row Show all	>Potri.009G059800.1 pacid=42772282 polypeptide=Potri.009G059800.1.p locus=Potri.009G059800 ID=Potri.009G059800.1.v4.1 annot-version=v4.1 ATGGCTACTCTTAGCTTCAATCCAACCAGAATTCCTCACAAACCCATATCCAAAACCGCTTCTTTTTCAAAACCCTCAGAGTTGCTTTTCCCTTTCTCTC TAAAACCCTCAAAACACCACGTAAAACCACTCCATCTCCAATCAAACATCATAACCAAACTCTCAGTTTCAACACAAGAAGAAGAAGTGGAGACTGAAAA AGAGGACCTCGAAGAGGATGACCCAACCGCAGAAACGGTCTATCTTGACCAGGAAACTGACCCAGATAGCATTGTGGAGTGGGAGTTGGATTTTTGTTCT AGACCTATACTTGATGTCAGAGGCAAGAAAGTATGGGAGCTTGTTGTTTGTGATGATTCTTTGTCACTTCAATTCACAAAATACTTCCCTAACAATGTTA TCAATAGTATCACTTTGAAGGATGCTATTGTATCCATTAGTGTGGATCTTGGTGTCCCCCTGCCTGAAAGAATCAGGTTCTTCAGGTCACAGATGCTGAC AATTATAACCAAAGCATGTAAAGAGATAGGTATAAAGCCTATTCCAAGTAAACGGTGCATATCACTACTTCTATGGCTCGAGGAGCGCTATGAGACTGTA TATACGCGTCATCCTGGTTTCCAAAAGGGAGCTAAACCACTTCTGGCATTAGATAACCCTTTCCCAATGGAACTTCCAGACAACCTTTTTGGGGAGAAAT GGGCCTTCGTCCAATTACCTTTCTCAGCTGTCCGAGAGGAAATTGCATCATTAGAGACAAGATTTTTTTTTGGTGCAAGTCTGGATTTGGATTTATTGGG AATTGAGATTGATGACAAGACAATGATACCTGGACTTGCTGTTGCATCTTCACGTGCTGAACCATTAGCAGCGTGGATGAACGGGCTGGAAGTGGTCGCG ATCGAAGCTGACACTTCTCGTGCTTGCTTGATTCTATCAGTTGGAATTGCAACCCGTTATGTTTATGCTACCTATAAGAAAACTCCTGTAACAACAGCTG AAGCTGAAGCCTGGGAAGCTGCAAAGAAGGCATGTGGAGGTTTACATTTTCTTGCCATCCAAAACGACTTGGATTCAGATGACTGTGTCGGATTTTGGCT TTTACTAGACTTGCCGCCTCCACCTGTATGA
AA sequence Show only first row Show all	>Potri.009G059800.1 pacid=42772282 polypeptide=Potri.009G059800.1.p locus=Potri.009G059800 ID=Potri.009G059800.1.v4.1 annot-version=v4.1 MATLSFNPTRIPHKPISKTASFSKPSELLFPFSLKPSKHHVKPLHLQSNIITKLSVSTQEEEVETEKEDLEEDDPTAETVYLDQETDPDSIVEWELDFCS RPILDVRGKKVWELVVCDDSLSLQFTKYFPNNVINSITLKDAIVSISVDLGVPLPERIRFFRSQMLTIITKACKEIGIKPIPSKRCISLLLWLEERYETV YTRHPGFQKGAKPLLALDNPFPMELPDNLFGEKWAFVQLPFSAVREEIASLETRFFFGASLDLDLLGIEIDDKTMIPGLAVASSRAEPLAAWMNGLEVVA IEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQNDLDSDDCVGFWLLLDLPPPPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08010		ATAB2	RNA binding (.1)		Potri.009G059800 [exp]	0	1
AT4G38225			unknown protein		Potri.004G207400 [exp]	1.00	0.9890
AT1G73885			unknown protein		Potri.015G053800 [exp]	2.82	0.9866
AT5G57170			Tautomerase/MIF superfamily pr...		Potri.006G075100 [exp]	4.00	0.9793
					Potri.005G112150 [exp]	4.24	0.9789
AT2G44870			unknown protein		Potri.004G030100 [exp]	4.24	0.9805
AT3G26070			Plastid-lipid associated prote...		Potri.001G209600 [exp]	4.89	0.9814
AT1G34000		OHP2	one-helix protein 2 (.1)		Potri.005G196100 [exp]	5.65	0.9685	OHP2.1
AT1G32060		PRK	phosphoribulokinase (.1)		Potri.003G099400 [exp]	6.24	0.9822
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Potri.001G005900 [exp]	6.70	0.9809
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Potri.005G199000 [exp]	8.48	0.9727

Compare expression of checked genes

Potri.009G059800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.