Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63510 592 / 0 FMN-linked oxidoreductases superfamily protein (.1.2) AT5G47970 568 / 0 Aldolase-type TIM barrel family protein (.1.2) AT5G67220 63 / 1e-10 FMN-linked oxidoreductases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G264900 [exp] 721 / 0 AT3G63510 607 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Potri.007G047300 [exp] 58 / 4e-09 AT5G67220 605 / 0.0 FMN-linked oxidoreductases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019714 [exp] 658 / 0 AT3G63510 596 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Lus10029508 [exp] 633 / 0 AT3G63510 618 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Lus10016405 [exp] 626 / 0 AT3G63510 575 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Lus10039605 [exp] 617 / 0 AT3G63510 619 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Lus10016407 [exp] 417 / 6e-147 AT3G63510 374 / 6e-130 FMN-linked oxidoreductases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF01207 [poplar] [flax] Dus Dihydrouridine synthase (Dus)
Representative CDS sequence Show only first row Show all	>Potri.009G059900.3 pacid=42772352 polypeptide=Potri.009G059900.3.p locus=Potri.009G059900 ID=Potri.009G059900.3.v4.1 annot-version=v4.1 ATGGGTGCCGAGCGATACCGTCCTCCTTTGTTCAGTGTTGCACCTATGATGGAGTGGACCGATAAACATTACAGGACTGTTGCACGGATCATATCAAAAC ATGCATGGCTGTATACAGAGATGCTTGCTGCGGAAACAATTGTTTATCAACAAGGAAATTTGGACAGATTTTTGGCATTTCCTTCTGAACAACATCCCAT TGTGCTGCAAATTGGTGGGAATAATTTAGACAACATTGCAAAAGCAACTCAACTTGCTAATGCTTATGGCTTTGATGAAATTAACTTGAATTGTGGGTGT CCTAGTGCCAAGGTAGCTGGACATGGATGTTTTGGTGCCCGTCTTATGCTCGATCCAAAGTTTGTCAGTGAAGCCATGTCAGTAATCGCTGCCAACACAG ATGTCCCTGTCAGTGTTAAGTGCCGAATTGGTGTAGATGATCATGATTCTTATAATGAGCTATGTGATTTTATCTATAAGGTTTCTTCTCTATCTCCCAC TAAGCATTTTATTATACATTCACGGAAGGCTCTGCTCAATGGCATTAGCCCAGCTGACAATCGAAGGATTCCTCCCCTGAAATATGAGTACTATTACGCC CTCTTACGTGATTTTCCTGACTTAAGATTTACAATAAATGGAGGCATAGATTGTGTTGATGAGGTAAATGCAGCATTAAGGGAAGGAGCACATGGTGTAA TGGTTGGGCGTGCTGCCTACAATAACCTTTGGAATACTCTGGCACATGTTGATTCTGCTGTTTATGGCGAGCCAAGCAGCGGCCTTACACGTCGTCAGGT CCTTGAACAATATCAAGTATATGGGGATGCTGTTCTGGGAACGTATGGGAATAATAGGCCTAATATGCGGGAGTTGATAAGGCCTTTATCTGGTTTTTTC TATTCTGAACCCGGAAACAGTTTGTGGAAACGCAAAGCTGATGCTGCTTTCCTGAATAAGAATATCAAGACAGTCAAATCCTTTTTTGAAGAAACCCTAG CAGCGATTCCTGATGCTGTCTTGGATTCACCTGTTGCGGAGCTACCATCTGGTCGTATAGATCTTTTTGCTAATGTACGGGGATTGCTTCCACCACCATA TGAAACCAGAACAGAGGAGGTAGTAGTAAATGCTCAGTCTTAA
AA sequence Show only first row Show all	>Potri.009G059900.3 pacid=42772352 polypeptide=Potri.009G059900.3.p locus=Potri.009G059900 ID=Potri.009G059900.3.v4.1 annot-version=v4.1 MGAERYRPPLFSVAPMMEWTDKHYRTVARIISKHAWLYTEMLAAETIVYQQGNLDRFLAFPSEQHPIVLQIGGNNLDNIAKATQLANAYGFDEINLNCGC PSAKVAGHGCFGARLMLDPKFVSEAMSVIAANTDVPVSVKCRIGVDDHDSYNELCDFIYKVSSLSPTKHFIIHSRKALLNGISPADNRRIPPLKYEYYYA LLRDFPDLRFTINGGIDCVDEVNAALREGAHGVMVGRAAYNNLWNTLAHVDSAVYGEPSSGLTRRQVLEQYQVYGDAVLGTYGNNRPNMRELIRPLSGFF YSEPGNSLWKRKADAAFLNKNIKTVKSFFEETLAAIPDAVLDSPVAELPSGRIDLFANVRGLLPPPYETRTEEVVVNAQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63510			FMN-linked oxidoreductases sup...		Potri.009G059900 [exp]	0	1
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Potri.004G182800 [exp]	3.46	0.8396
AT4G02120			CTP synthase family protein (....		Potri.014G123200 [exp]	3.74	0.8361
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Potri.002G157100 [exp]	3.87	0.8406
AT2G20740			Tetraspanin family protein (.1...		Potri.018G038400 [exp]	5.47	0.8571
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Potri.005G099400 [exp]	6.92	0.8699
AT3G07750			3'-5'-exoribonuclease family p...		Potri.014G166200 [exp]	7.07	0.8138
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.004G144300 [exp]	7.54	0.8520	SQN.2
AT4G30700			Pentatricopeptide repeat (PPR)...		Potri.016G077700 [exp]	8.00	0.8303
AT1G17690		NOF1	nucleolar factor 1, unknown pr...		Potri.003G010000 [exp]	17.49	0.8021
AT1G19880			Regulator of chromosome conden...		Potri.002G026600 [exp]	17.88	0.8077

Compare expression of checked genes

Potri.009G059900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.