Plant FIBer expression Database

Potri.009G060000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G47940 228 / 9e-65 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G265100
[exp]
938 / 0 AT5G47940 290 / 5e-86 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019713
[exp]
456 / 2e-149 AT5G47940 227 / 4e-63 unknown protein
Lus10016408
[exp]
448 / 2e-146 AT5G47940 224 / 6e-62 unknown protein
Lus10016406
[exp]
198 / 2e-59 AT5G47940 106 / 1e-26 unknown protein
PFAM info
Representative CDS sequence
>Potri.009G060000.1 pacid=42772833 polypeptide=Potri.009G060000.1.p locus=Potri.009G060000 ID=Potri.009G060000.1.v4.1 annot-version=v4.1
ATGGAATCGTCTGAGAACTACGTCAATTACGGCACTTCATGGACCGCCGCAACTAACTGGACCATCGCCGCTGGCTCTCTCGTTAACTCACTCACTTTCG
AGTCCTCTCTTCCCCTAATCAGCGACGAAGATAATAATGATCACCATCAAATCTCCCCTGACGATTCTAAATCTAAATCTCCTCTTATCATCTACGCTCC
TACACCTGATTCCGCTCCCTGCGAGATCACTATTAATTTTGCACAAAAACATGAGGTGAGACAGGTTTATGTTCGAAGCACTGCTCGAGTTTATGAAATA
TACTATGCCCCTGAGCTGCAGAGCAGCAGCGAGTATTTGTGCACTGTTTGCTGTGGCATTGCTGCTAGAAATGAAGAAGTGCAGCATGCTACCAATATTG
AAGAAGCTGTTTTGGCTCATGCAAGGAGTTCCACTCAAGAACTAGCTGAAGAGAAACTCAGAAATGGTAGAAGCCTAACCCCCAATGAAAATGACTGGTT
TGAAGTGAAAGTTCTTGATAGTCCCCCGGTCATCAACAGAAACAGTTCTTCACCATCAAATTCTGACATAAACCCAAAGAGAAACTCACAGGACTTGTAT
GAGGCTGCAGCAGAGATCACTGATGCAAAACCTTCCACATCCCTTACACTAAGGCTGCTTTCACTTCAGAATAAAGGTTATGTTAGTGTTGATGAAGTTT
ATGTATTTGGTGATCCTGTCGACACAAGTAGTTTGGATAATCAAGTGGGTCTAATGGAAAACTATGCTGGAAATTCACCTATGGCCATGCTTGTACCTGC
CTTTTTTCAGTTGTCTAAAACAAAGGGTATTGGTGGAGGAGAAGATAAATACAATATTGATACAAGGGAAAGGCAAGAGTTGCAGGAAATTGGGTCAAAA
GAAGCTGTTCCAGTTGATGTTGAGAAGAAAATTCAGGAGGAAGTGAGGTTGCACAAAGTTGTCGGGCCTACTTCCAAACCAGTCCAGCATGAGATCCTCC
AAGTTTCAAATACAGAGAGCAAATCTGATATTTCACACAATCATTTTCAAGGTGTCCTGGATCAGCTTGTCTCTCGAGTTAACAGAATAGAGGATCTCTT
TTTGAGGTTTGAGGAAAGTATGCTGAAGCCCATTAACAGCATCGATGTGAGGCTCCAGCGAGTCGAGCATCAACTTGATGTGCTCACAAAGAAAACTGAG
AACTCTGCTCCGGTTTCTTGCACAAGAATTTCTGCTCCTGAGTTTTCATGCAGTGAATCAGAGACCAGCTCCTTCTATAACAGTGGGAGTGGGGATATTG
GTTATATGGCATGTGAAACAAATAAGAGCCATTCACCTTCACCTCTGACTTCCATTCTCGCTGATGCCACCCCTGTTTCAGTAAATGACACAAATTTACA
ACCTGGTCTGGTAGTCACTGCTCCTGAGTTCTCAAATTATGATGACGAGGTAGAAGATCATGCTGTGGAATCAGTGAAGGAATCTCCAAAGGTCAAACAA
AAGCATGCTATGTCAACTGATGATGCTTTTGCATATGCACTTGCTGGATTCTTATCTTCGACTTCAATGCGGTCCCAGAAATATTCTCAAACTTTTGCAT
TTAAGGCTCCTGATTTTCCAAGTGAGGAAGAAAATACCAACGAGAAAGCAGCTCCACCAATGGTTGAATCTGAACTAAATATAGACCCTTCGCCTTATTT
CAGTGAATCTGATGGGACAGAGCACATGGGAATTTCACTTTCTTCTGTTTCAAATGTTACTACTTTAAAGGATGATGAGAATGTGATGAGATATCTTGAT
GATAATCGATCTTTGAAAATGGTCGTGGGAGTTGATGAAAAATGCCAACATAGTGAAGGGGGAGAAAGTGATTCACAGGACATTTGTGTTGGCCATGAAG
TTGCACCAGCCACATATGATGTTGCACCAGCCACATATGATGTTGCGGGTACTGATTCATATCAGATGAATCACGGCATAAAGGATGGAGAAGTTGGCGA
TGGATCAAGTGACATTTTTGATCTACAGACAACCTGA
AA sequence
>Potri.009G060000.1 pacid=42772833 polypeptide=Potri.009G060000.1.p locus=Potri.009G060000 ID=Potri.009G060000.1.v4.1 annot-version=v4.1
MESSENYVNYGTSWTAATNWTIAAGSLVNSLTFESSLPLISDEDNNDHHQISPDDSKSKSPLIIYAPTPDSAPCEITINFAQKHEVRQVYVRSTARVYEI
YYAPELQSSSEYLCTVCCGIAARNEEVQHATNIEEAVLAHARSSTQELAEEKLRNGRSLTPNENDWFEVKVLDSPPVINRNSSSPSNSDINPKRNSQDLY
EAAAEITDAKPSTSLTLRLLSLQNKGYVSVDEVYVFGDPVDTSSLDNQVGLMENYAGNSPMAMLVPAFFQLSKTKGIGGGEDKYNIDTRERQELQEIGSK
EAVPVDVEKKIQEEVRLHKVVGPTSKPVQHEILQVSNTESKSDISHNHFQGVLDQLVSRVNRIEDLFLRFEESMLKPINSIDVRLQRVEHQLDVLTKKTE
NSAPVSCTRISAPEFSCSESETSSFYNSGSGDIGYMACETNKSHSPSPLTSILADATPVSVNDTNLQPGLVVTAPEFSNYDDEVEDHAVESVKESPKVKQ
KHAMSTDDAFAYALAGFLSSTSMRSQKYSQTFAFKAPDFPSEEENTNEKAAPPMVESELNIDPSPYFSESDGTEHMGISLSSVSNVTTLKDDENVMRYLD
DNRSLKMVVGVDEKCQHSEGGESDSQDICVGHEVAPATYDVAPATYDVAGTDSYQMNHGIKDGEVGDGSSDIFDLQTT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G47940 unknown protein Potri.009G060000
[exp]
0 1
AT3G20480 AtLpxK lipid X K, tetraacyldisacchari... Potri.001G418800
[exp]
6.63 0.8086
AT4G11130 SMD1, RDR2 SILENCING MOVEMENT DEFICIENT 1... Potri.015G073700
[exp]
9.79 0.7473 RDR904
AT5G13710 CPH, SMT1 CEPHALOPOD, sterol methyltrans... Potri.016G056000
[exp]
10.81 0.7808
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.005G050400
[exp]
11.83 0.7692
AT3G42670 CLSY1, CLSY, CH... CLASSY 1, CLASSY1, chromatin r... Potri.008G073500
[exp]
14.49 0.8005
AT5G52230 MBD13 methyl-CPG-binding domain prot... Potri.015G140100
[exp]
18.89 0.7679
AT5G24680 Peptidase C78, ubiquitin fold ... Potri.012G004300
[exp]
20.92 0.7050
AT5G19420 Regulator of chromosome conden... Potri.009G071800
[exp]
24.08 0.7415
AT1G13040 Pentatricopeptide repeat (PPR-... Potri.008G185000
[exp]
24.18 0.8072
AT2G24530 unknown protein Potri.001G037500
[exp]
24.24 0.7796

Potri.009G060000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.