Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CESA4.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05170 1838 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT4G32410 1511 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT2G25540 1466 / 0 CESA10 cellulose synthase 10 (.1) AT5G17420 1419 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT5G09870 1395 / 0 CESA5 cellulose synthase 5 (.1) AT5G64740 1384 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT2G21770 1366 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT4G39350 1360 / 0 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1) AT4G18780 1244 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT3G03050 829 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G266400 [exp] 1998 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.016G054900 [exp] 1797 / 0 AT5G05170 1754 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.006G052600 [exp] 1793 / 0 AT5G05170 1749 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.006G251900 [exp] 1559 / 0 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.018G029400 [exp] 1554 / 0 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.013G019800 [exp] 1452 / 0 AT5G64740 1512 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.006G181900 [exp] 1446 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.005G027600 [exp] 1444 / 0 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.018G103900 [exp] 1444 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039607 [exp] 1833 / 0 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10012198 [exp] 1752 / 0 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 1743 / 0 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10028597 [exp] 1540 / 0 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10018902 [exp] 1534 / 0 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10002939 [exp] 1383 / 0 AT5G64740 1870 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10003526 [exp] 1377 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10041063 [exp] 1374 / 0 AT5G64740 1868 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10006161 [exp] 1312 / 0 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10029245 [exp] 1248 / 0 AT4G18780 1659 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2 CL0229 [poplar] [flax] RING PF14569 [poplar] [flax] zf-UDP Zinc-binding RING-finger
Representative CDS sequence Show only first row Show all	>Potri.009G060800.7 pacid=42771858 polypeptide=Potri.009G060800.7.p locus=Potri.009G060800 ID=Potri.009G060800.7.v4.1 annot-version=v4.1 ATGGAATCAGAAGGTGAAACCGGGGTGAAGCCCATGACAAGTATAGTTGGACAGGTTTGCCAGATCTGTAGTGACAGTGTTGGGAAGACTGTGGATGGTG AACCATTTGTTGCTTGCGATGTTTGTGCATTTCCAGTGTGCAGGCCTTGCTATGAGTATGAGAGGAAGGATGGGAACCAGTCTTGCCCTCAGTGCAAAAC CAGATACAGGAGGCACAAAGGTAGCCCTGCCATTCTTGGTGATAGAGAAGAGGATGGTGATGCTGATGATGGAGCTATTGATTTTAATTACTCTTCAGAA AATCAAAACCAGAAACAGAAGATTGCAGAACGCATGTTGAGCTGGCAGATGACGTTTGGACGGGGGGAAGATCTTGGGGCTGCAAATTATGATAAAGAGG TTTCACATAACCATATTCCACTGATTACCAATGGACATGAGGTTTCCGGAGAGCTGTCTGCCGCATCTCCTGAGCATATTTCTATGGCATCTCCTGGAGC TGCTGGTGGGAAGCACATCCCTTATGCATCTGATGTCCACCAATCATCTAATGGGAGGGTTGTGGACCCAGTAAGGGAGTTTGGTTCACCAGGACTGGGC AATGTGGCCTGGAAGGAGAGAGTAGATGGCTGGAAGATGAAGCAGGACAAGAATGTTGTTCCTATGAGTACTGGCCATGCTCCTTCTGAAAGGGGTGTTG GAGATATTGATGCCGCCACAGATGTGCTTGTAGATGACTCTCTACTGAATGATGAAGCTCGGCAACCTCTCTCAAGGAAGGTTTCCATTCCTTCTTCTAG GATTAATCCATACAGGATGGTCATTGTTTTGCGGCTTATTATCCTCTGCATTTTCTTGCATTACCGAATCACAAATCCTGTGCCCAATGCATATGCTTTG TGGTTAATATCTGTGATATGTGAGATTTGGTTTGCAATATCCTGGATATTGGATCAGTTCCCTAAGTGGCTCCCTGTAAATCGTGAAACGTACCTGGACA GGCTTGCTTTGAGATATGAACATGAAGGAGAACCATCACAGCTAGCTGCGGTTGACATTTTTGTCAGTACTGTGGACCCATTAAAGGAGCCTCCTCTTGT GACAGCAAACACAGTGCTATCTATTCTTGCTGTTGACTACCCAATTGACAAAGTCTCGTGCTATGTCTCTGATGATGGTGCTGCAATGTTGACGTTTGAA GCTTTGTCTGAGACTTCAGAGTTTGCCAGAAAATGGGTACCCTTCTGCAAGAAATACAACATTGAACCTCGGGCTCCAGAATTCTACTTTTCACAGAAGA TTGACTACTTGAAGGATAAAGTGCAACCATCTTTTGTCAAAGATCGTAGAGCTATGAAGAGAGAATATGAAGAATTTAAAATTCGTGTTAATGGGCTTGT TTCCAAGGCACAAAAAGTGCCTGAAGAAGGATGGATTATGCAAGATGGGACCCCATGGCCTGGAAATAACACCAGAGACCATCCAGGAATGATTCAGGTT TTCTTAGGGCAAAGTGGAGGGCTTGATACTGATGGTAATGAGCTGCCACGGTTAGTTTATGTTTCTCGTGAAAAGCGTCCAGGCTTCCAGCACCACAAGA AAGCTGGTGCCATGAACTCACTTGTTCGTGTATCAGCTGTGCTAACTAATGGGCCTTTCTTGTTGAATCTTGACTGTGATCACTACATAAACAATAGCAA GGCTTTGAGAGAAGCTATGTGTTTCATGATGGATCCTAATCTTGGAAAACATGTCTGCTATGTTCAATTTCCACAAAGATTTGATGGCATTGACAAGAAT GATCGATATGCCAATCGCAATACTGTGTTCTTTGATATAAACTTGAGGGGTTTGGATGGTATTCAAGGACCTGTCTATGTGGGCACTGGATGTGTCTTTA ATAGGACGGCATTGTATGGTTATGAACCTCCCCTCAAACCCAAGCATAAGAAACCAGGGTTCCTTTCTTCCCTCTGTGGTGGATCACGAAAGAAGAGTTC TAAATCAAGTAAAAAGGGCTCTGACAAGAAGAAATCTGGAAAGCATGCAGATCCAACTGTACCTGTTTTCAGCTTGGAAGATATAGAAGAGGGCGTTGAA GGAGCTGGATTTGATGATGAGAAGTCACTTCTCATGTCACAGACGAGCCTGGAGAAGAGGTTTGGCCAGTCAGCTGTTTTTGTTGCTTCCACACTCATGG AGAATGGCGGTGTTCCTCAGTCTGCAACTCCAGAAACTCTTCTTAAAGAGGCTATTCATGTCATCAGCTGTGGATACGAGGACAAAACAGATTGGGGATC TGAGATAGGATGGATCTATGGTTCTGTTACAGAAGATATTCTTACTGGATTCAAGATGCATGCCCGTGGTTGGCGGTCAATTTACTGCATGCCCAAGCGC CCAGCCTTTAAAGGGTCTGCTCCTATTAATCTTTCTGATCGTCTGAACCAAGTGCTTCGATGGGCTCTAGGTTCTGTTGAAATTCTTCTCAGTCGGCATT GTCCAATTTGGTATGGCTATGGTGGTAGGCTGAAATGGCTCGAGAGGTTTGCATATGTAAACACTACCATTTATCCAATCACCGCCATTCCTCTTCTCTT TTACTGCACACTTCCAGCTATCTGTCTATTGACAGACAAGTTCATCATTCCACAGATTAGTAACATCGCAAGTATATGGTTTATTTCTCTCTTTCTTTCC ATCTTTGCAACCGGTATTTTGGAGATGAGGTGGAGTGGTGTTGGGATTGATGAATGGTGGAGGAACGAACAGTTTTGGGTTATTGGTGGTGTTTCAGCCC ATCTTTTTGCTGTTTTCCAAGGCCTGCTCAAAGTACTCGCTGGAATTGACACCAACTTCACTGTCACGTCCAAGTCATCAGACGAGGACGGTGATTTCAC TGAACTGTACATGTTTAAATGGACAACTCTGCTCATCCCACCAACAACTCTCCTCATCGTTAACTTGGTAGGTGTTGTTGCCGGGATATCCCATGCCATC AACAGTGGTTACCAGTCGTGGGGTCCACTCTTTGGCAAGCTTTTCTTTGCCTTCTGGGTGATCGTCCATCTCTACCCTTTCCTCAAAGGTTTGATGGGTC GCCAGAACCGGACACCCACCATTGTTGTCGTGTGGTCTATTCTTCTTGCATCCATCTTTTCGTTGTTGTGGGTGAGAGTTGATCCTTTCACCACTAGAGT TACAGGTCCGGATGTTGAGCAGTGTGGCATCAACTGTTAA
AA sequence Show only first row Show all	>Potri.009G060800.7 pacid=42771858 polypeptide=Potri.009G060800.7.p locus=Potri.009G060800 ID=Potri.009G060800.7.v4.1 annot-version=v4.1 MESEGETGVKPMTSIVGQVCQICSDSVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYRRHKGSPAILGDREEDGDADDGAIDFNYSSE NQNQKQKIAERMLSWQMTFGRGEDLGAANYDKEVSHNHIPLITNGHEVSGELSAASPEHISMASPGAAGGKHIPYASDVHQSSNGRVVDPVREFGSPGLG NVAWKERVDGWKMKQDKNVVPMSTGHAPSERGVGDIDAATDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLIILCIFLHYRITNPVPNAYAL WLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYEHEGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPIDKVSCYVSDDGAAMLTFE ALSETSEFARKWVPFCKKYNIEPRAPEFYFSQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRVNGLVSKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQV FLGQSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNSLVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDKN DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGFLSSLCGGSRKKSSKSSKKGSDKKKSGKHADPTVPVFSLEDIEEGVE GAGFDDEKSLLMSQTSLEKRFGQSAVFVASTLMENGGVPQSATPETLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKR PAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYGGRLKWLERFAYVNTTIYPITAIPLLFYCTLPAICLLTDKFIIPQISNIASIWFISLFLS IFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKSSDEDGDFTELYMFKWTTLLIPPTTLLIVNLVGVVAGISHAI NSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.009G060800 [exp]	0	1	CESA4.5
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Potri.003G073700 [exp]	2.44	0.7135
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.016G066500 [exp]	5.29	0.6727
AT3G62650			unknown protein		Potri.014G124900 [exp]	7.34	0.6962
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.002G019500 [exp]	8.48	0.6738	Pt-ARAC4.1
AT5G18980			ARM repeat superfamily protein...		Potri.008G200500 [exp]	11.13	0.6830
AT5G64500			Major facilitator superfamily ...		Potri.009G081100 [exp]	12.96	0.6401
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Potri.004G188100 [exp]	13.56	0.6701
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Potri.001G006700 [exp]	14.14	0.6761
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.013G031700 [exp]	14.49	0.6389	Pt-NHX2.2
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Potri.006G167200 [exp]	21.90	0.6558	PSC450.2

Compare expression of checked genes

Potri.009G060800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.