Plant FIBer expression Database

Potri.009G060901 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G179100
[exp]
0 / 1 AT1G52380 326 / 4e-107 NUP50 (Nucleoporin 50 kDa) protein (.1)
Potri.003G056400
[exp]
0 / 1 AT1G52380 225 / 7e-68 NUP50 (Nucleoporin 50 kDa) protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.009G060901.1 pacid=42772834 polypeptide=Potri.009G060901.1.p locus=Potri.009G060901 ID=Potri.009G060901.1.v4.1 annot-version=v4.1
ATGGTCTTTCAATATCTAAGGATCTCCGGCGAATGTCATAATAGCTTCGCTGTGAGTGCTACCATGTCTGTGTGCTCAGAGGATTGGATGATGGAGTTGA
TGTGCTTTGGTTGCCACGAGCTTTCACAATTCTTTTGCCCGCCGGTACCTTCATCATCAACAAGACGGGGGTTATCTCTGGAAATCTCTCTTCCAGCAGC
CCTCTTCGAAGGAGGAAGGGGATTTTCTGCATCCGCATCGTCAAACGAAGCAGAAAACTCAATCCTACGAACTATTATCCCCAGAGGAATCTTGCCTATC
AACAGATCTTATCTTTCTCACCACATGACTATCAAATAA
AA sequence
>Potri.009G060901.1 pacid=42772834 polypeptide=Potri.009G060901.1.p locus=Potri.009G060901 ID=Potri.009G060901.1.v4.1 annot-version=v4.1
MVFQYLRISGECHNSFAVSATMSVCSEDWMMELMCFGCHELSQFFCPPVPSSSTRRGLSLEISLPAALFEGGRGFSASASSNEAENSILRTIIPRGILPI
NRSYLSHHMTIK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.009G060901
[exp]
0 1
AT5G06370 NC domain-containing protein-r... Potri.006G203300
[exp]
1.73 0.8456
Potri.001G077400
[exp]
8.12 0.8293
AT4G32020 unknown protein Potri.018G022400
[exp]
10.95 0.8167
AT4G26700 ATFIM1 ARABIDOPSIS THALIANA FIMBRIN 1... Potri.011G086500
[exp]
11.18 0.8386 FIM1.1
AT5G09580 unknown protein Potri.001G285000
[exp]
15.49 0.8240
AT4G01810 Sec23/Sec24 protein transport ... Potri.002G187100
[exp]
16.00 0.8402
AT1G21380 Target of Myb protein 1 (.1) Potri.002G075500
[exp]
17.23 0.8281
AT1G04590 EMB2748 unknown protein Potri.016G103000
[exp]
22.00 0.8203
AT4G37020 unknown protein Potri.007G043200
[exp]
22.97 0.8284
AT2G45910 U-box domain-containing protei... Potri.009G030400
[exp]
22.97 0.7784

Potri.009G060901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.