Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-FRD3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08040 566 / 0 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT1G51340 532 / 0 MATE efflux family protein (.1.2) AT4G38380 307 / 1e-97 MATE efflux family protein (.1) AT2G38330 296 / 4e-94 MATE efflux family protein (.1) AT2G21340 62 / 7e-10 MATE efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G266900 [exp] 842 / 0 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.009G053700 [exp] 582 / 0 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.016G053600 [exp] 572 / 0 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.004G183600 [exp] 330 / 5e-106 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.009G143400 [exp] 329 / 1e-105 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.016G126000 [exp] 313 / 9e-100 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.005G102800 [exp] 301 / 2e-95 AT4G38380 547 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039609 [exp] 672 / 0 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10029517 [exp] 639 / 0 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10016412 [exp] 625 / 0 AT1G51340 569 / 0.0 MATE efflux family protein (.1.2) Lus10027367 [exp] 525 / 0 AT1G51340 664 / 0.0 MATE efflux family protein (.1.2) Lus10042365 [exp] 509 / 3e-177 AT1G51340 571 / 0.0 MATE efflux family protein (.1.2) Lus10026303 [exp] 507 / 2e-176 AT1G51340 564 / 0.0 MATE efflux family protein (.1.2) Lus10012227 [exp] 328 / 1e-105 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10023943 [exp] 299 / 4e-94 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10026829 [exp] 265 / 1e-81 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10002856 [exp] 258 / 1e-79 AT2G38330 477 / 2e-165 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.009G061100.2 pacid=42772149 polypeptide=Potri.009G061100.2.p locus=Potri.009G061100 ID=Potri.009G061100.2.v4.1 annot-version=v4.1 ATGTCTGAGGAAAGTGCTCTGCAGCCAGTTGGTCTGAGAAAGCCGAAGATACCACTCTCTGTTTTTTTTAGAGATGCAAGACGTGTTTTCAAAAAAGATG AACTTGGTTCGGAGATCATAAGGATTGCATTGCCTGCAGCAATGGCTTTAGCTGCTGATCCTGTTGCCTCCCTGATTGACACAGCCTTCATTGGCCGTCT AGGTCCAGTGGAAATAGCTGCTGTAGGAGTTGCTATTGCCATATTCAATCAAGCCTCAAAAGTCACCATATTTCCATTGGTTAGTATAACGACTTCTTTT GTAGCTGAGGAAGAAACTCTTCAAAGAAATCGCGAAGTTGAAGCAGAAAAGGCTGGGGACTTGAATAAAGATGCGGAAAGTGGTAAAGCAAAAGAGTCGG TGCCTGATGAGGAAATGCTCGAGAACTTGGAAAAAGGTTCAGACACAAACAATGAAAAGAACATTGAAAAGAAAGATTCAGTGCCGGGGGATGATTGTAA GGCAACCACAAGCAAGTCTACTACTCTTACTGATACCAAAAGTGTAGAGCCCAAACGAAATAAAGAGAGGCTACATATCCCCTCAGCGTCGACAGCATTA ATTGTTGGTGGAATTCTTGGTCTAGTGCAAACTATATTCCTCGTGTTTGGGGCAAAACCTCTCCTGAATATTATGGGTGTGAAATCTGATTCGGCGATGT TAACCCCTGCAAGGAAGTACTTGACATTGAGAGCACTAGGTTCTCCTGCAGTTCTTTTGTCACTGGCAATGCAAGGGGTCTTTCGAGGCTTTAAAGACAC AAGAACCCCTTTATATGCCACTGTCATAGGAGATTTAACAAATATCGTCTTAGACCCGATATTTATCTTCGTCTTCAAGTGGGGTGTCAGTGGTGCAGCC ATTGCTCACGTCCTTTCTCAGTACTTGATTTCAGTAATTCTCTTGTGGAAGTTGATGAGGAAAGTTAATCTTTTACCCCCAAGTGTTAAAGATTTGCAAT TTAGTCGGTTCCTCAAAAATGGCTTTCTGCTGTTAGCTCGAGTTGTAGCAGCAACAATCTGCGTGACCTTGGCAGCATCAAGGGCAACTCGATTGGGTTC AACAACTATGGCTGCATTCCAAATTTGCTTACAAGTTTGGTTGACATCCTCCCTTCTTGCTGATGGCTTGGCAGTTGCCGGACAGGCAATTATTGCTTGT GCATTTGCTGAAAAGAACTACCAGAAGGCAACAACTGCTGCGACCCGGGTGTTGCAGATGAGTTTTATTCTTGGTCTTGGGCTAGCTGTGTTTGTTGGAC TTGGTCTGCACTTCGGTGGTGTAATTTTTTCAAAAGATCCTGATGTTCTTCATATTATAGCCATCGGCATCCCGTTTGTTGCTGCTACACAACCCATCAA CTCGATAGCTTTTGTCTTTGATGGTGTAAACTTCGGAGCATCTGATTTTGCTTACTCTTCGTATTCCATGGTTCTGGTGGCCATAGCAAGCATTCCAGCC ATTTTTGTTCTCTCTAAAACTGGTGGATTTGTTGGGATTTGGGTTGCTTTAACCATCTTTATGGGGCTTCGCACATTTGCTGGTGTATGGAGGATGGGAA CTGGAACTGGACCTTGGCGCTTTCTCAGAGGGCGATTGTTGACCTAG
AA sequence Show only first row Show all	>Potri.009G061100.2 pacid=42772149 polypeptide=Potri.009G061100.2.p locus=Potri.009G061100 ID=Potri.009G061100.2.v4.1 annot-version=v4.1 MSEESALQPVGLRKPKIPLSVFFRDARRVFKKDELGSEIIRIALPAAMALAADPVASLIDTAFIGRLGPVEIAAVGVAIAIFNQASKVTIFPLVSITTSF VAEEETLQRNREVEAEKAGDLNKDAESGKAKESVPDEEMLENLEKGSDTNNEKNIEKKDSVPGDDCKATTSKSTTLTDTKSVEPKRNKERLHIPSASTAL IVGGILGLVQTIFLVFGAKPLLNIMGVKSDSAMLTPARKYLTLRALGSPAVLLSLAMQGVFRGFKDTRTPLYATVIGDLTNIVLDPIFIFVFKWGVSGAA IAHVLSQYLISVILLWKLMRKVNLLPPSVKDLQFSRFLKNGFLLLARVVAATICVTLAASRATRLGSTTMAAFQICLQVWLTSSLLADGLAVAGQAIIAC AFAEKNYQKATTAATRVLQMSFILGLGLAVFVGLGLHFGGVIFSKDPDVLHIIAIGIPFVAATQPINSIAFVFDGVNFGASDFAYSSYSMVLVAIASIPA IFVLSKTGGFVGIWVALTIFMGLRTFAGVWRMGTGTGPWRFLRGRLLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Potri.009G061100 [exp]	0	1	Pt-FRD3.1
AT1G49470			Family of unknown function (DU...		Potri.009G108900 [exp]	1.00	0.9000
AT2G41480			Peroxidase superfamily protein...		Potri.018G131600 [exp]	1.41	0.8420
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.018G112000 [exp]	3.46	0.8386
AT1G73220		1-Oct, ATOCT1	organic cation/carnitine trans...		Potri.015G029400 [exp]	3.74	0.8088
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Potri.016G134600 [exp]	3.87	0.8246
AT2G18960		OST2, PMA, AHA1	PLASMA MEMBRANE PROTON ATPASE,...		Potri.018G090300 [exp]	5.29	0.7618	Pt-VHA2.2
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.018G112100 [exp]	6.00	0.8245
AT4G09760			Protein kinase superfamily pro...		Potri.002G063700 [exp]	7.07	0.7800
AT5G02880		UPL4	ubiquitin-protein ligase 4 (.1...		Potri.006G132000 [exp]	8.06	0.7643
AT2G37130			Peroxidase superfamily protein...		Potri.006G129900 [exp]	9.79	0.7581

Compare expression of checked genes

Potri.009G061100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.