Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13450 220 / 5e-72 ATP5 delta subunit of Mt ATP synthase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G087300 [exp] 54 / 2e-08 AT4G09650 227 / 9e-75 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019706 [exp] 284 / 4e-97 AT5G13450 263 / 6e-89 delta subunit of Mt ATP synthase (.1.2) Lus10016414 [exp] 284 / 4e-97 AT5G13450 262 / 9e-89 delta subunit of Mt ATP synthase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0255 [poplar] [flax] ATP_synthase PF00213 [poplar] [flax] OSCP ATP synthase delta (OSCP) subunit
Representative CDS sequence Show only first row Show all	>Potri.009G061600.1 pacid=42772529 polypeptide=Potri.009G061600.1.p locus=Potri.009G061600 ID=Potri.009G061600.1.v4.1 annot-version=v4.1 ATGGCTTCTTCTCGTATCAGATCAGGCCTCCCTCTTCTCAACAGGATTTTGAGATCTGATTCTCTATCTACTCAACGATCGGCTATTCAACGCTCCGTCT TGACCCCTGCTTTCACCGCATCTCAGCCCTCAAAAAATCTCAGCACTTCAACTGCGCAGAAGGAGGAGAAAATCAAGTTGCCTATCACTTTATACGGGGG AACTGGAAACTATGCCTCTGCTTTGTTCATAGCGGCCAAAAGGTCTAAGGTGCTGGATCAGGTTGAGTCTGAAATTCTTGACCTCATTGCGGCTTCAAAG AAAAGCCCAAAATTTTCTCAGTTCTTGAAGGACTTGTCAGTGCGAGCTGATACTAGAGTCAAAGCCATTAATGAAATTTGTGCTACAGCAAAATTTTCAG AAATCACGAAGAATTTCTTGGTTATAGTGGCTGAGAATGGGAGGTTAAGTTACTTGGAAAGCATTGTAAATAAATTCAAGCAGCTGACCATGGCAGACAA GGGGATAATAAAAGCTATTGTCACAACTATCATGCCCCTACCCCCACAAGAGGAAAAGGAATTGAAGGAAACACTGCAGGATATTATTGGTCACGGGAAG TCCGTCGAGGTTGAACAAAAGATTGATCCTAGTATTCTTGGGGGGATTATGATAGAGTTTGAGCAGAAGTTGTTTGACATGTCCATAAGAACTAGGGCGA AGCAGATGGAGAGGTTCCTGCGTGAGCCTGTGGACTTTGATGCCCTCTGA
AA sequence Show only first row Show all	>Potri.009G061600.1 pacid=42772529 polypeptide=Potri.009G061600.1.p locus=Potri.009G061600 ID=Potri.009G061600.1.v4.1 annot-version=v4.1 MASSRIRSGLPLLNRILRSDSLSTQRSAIQRSVLTPAFTASQPSKNLSTSTAQKEEKIKLPITLYGGTGNYASALFIAAKRSKVLDQVESEILDLIAASK KSPKFSQFLKDLSVRADTRVKAINEICATAKFSEITKNFLVIVAENGRLSYLESIVNKFKQLTMADKGIIKAIVTTIMPLPPQEEKELKETLQDIIGHGK SVEVEQKIDPSILGGIMIEFEQKLFDMSIRTRAKQMERFLREPVDFDAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Potri.009G061600 [exp]	0	1
AT5G47030			ATPase, F1 complex, delta/epsi...		Potri.003G086100 [exp]	1.00	0.9645
AT2G20360			NAD(P)-binding Rossmann-fold s...		Potri.002G255900 [exp]	1.41	0.9460
AT5G08690			ATP synthase alpha/beta family...		Potri.010G116600 [exp]	2.44	0.9436	PtrAtpB_1,ATP.1
AT3G08580		AAC1	ADP/ATP carrier 1 (.1.2)		Potri.001G267800 [exp]	3.16	0.9401	Pt-ANT1.1
AT4G12590			Protein of unknown function DU...		Potri.006G011500 [exp]	3.87	0.9038
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Potri.001G322300 [exp]	4.24	0.9344	PtrPht3-2
AT5G45620			Proteasome component (PCI) dom...		Potri.001G135200 [exp]	5.19	0.9202
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Potri.001G376500 [exp]	6.48	0.9301
AT4G24820			26S proteasome, regulatory sub...		Potri.015G090900 [exp]	7.07	0.8949
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.002G034100 [exp]	7.48	0.9410	APFI.1

Compare expression of checked genes

Potri.009G061600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.